AT3G48380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2; CONTAINS InterPro DOMAIN/s: Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 (InterPro:IPR012462); Has 331 Blast hits to 329 proteins in 105 species: Archae - 0; Bacteria - 0; Metazoa - 242; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:17916468..17920099 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71469.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||
| Length | 645 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVPSSETATV RVLCQKLLLS PNHPGTLQWL IGSPFFPPFT VVSTFRCIHH SPDFQQESDD LRKLLPKGFE VIGGLIIGDS DAEKSAFEAV RAARRLRKHL 101: SEGGELDDEK IVGASCDVGT GTIHFFISKS ENTTKLEPVG SVVYEDKSGK YLWENGCLLH CELPIKLPFY YPASSPSDSK EKFSDAIDAV ITQFKEPYVV 201: YIAETLKKAS GGVPKPVVLR GKDLGFGADA SNINRLPSAD QVSDIKMLSC SHLCLNNKTA PAVNSAENAD KIHISVLLNR SEKLPTSGAP VAEYFPAMEE 301: ARLIVVDLNL DVLTYAPKDL PLMHAVSNLV IPALVDQLYS LKKIILPHLL VEHPQLRIYH FNPPGVLHPI TSMYELNYGE TEMKQVDVRK LLHLRLGLPL 401: DRPLLRIANA LDLSVNDDSK SNMNRRGSTL LKDVHIGIPS SGVSEGVASI IQGSYEYYHY LQDGFDDSGW GCAYRSLQTI ISWFRLQHYT SISVPSHREI 501: QQTLVEIGDK DPSFVGSREW IGAIELSFVL DKLLGVSCKI MNFRSGSELP EKCRELAMHF ENQGTPIMIG GGVLAYTLLG VDYDEGSGDC AFLILDPHYT 601: GSEDHKKIVN GGWCGWKKAV DSKGKSFFLH NKFYNLLLPQ RPNMV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)