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AT3G49310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF791 (InterPro:IPR008509), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G27720.1); Has 829 Blast hits to 822 proteins in 293 species: Archae - 12; Bacteria - 438; Metazoa - 97; Fungi - 59; Plants - 151; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSP5eggNOG:KOG4332EMBL:AC012329EMBL:BT011238
EMBL:BT012543EMBL:CP002686EnsemblPlants:AT3G49310EnsemblPlants:AT3G49310.1
entrez:824093GeneID:824093GO:GO:0005794GO:GO:0015098
GO:GO:0016021Gramene:AT3G49310.1hmmpanther:PTHR23516hmmpanther:PTHR23516:SF4
InterPro:IPR008509InterPro:IPR020846KEGG:ath:AT3G49310OMA:RTACIAY
Pfam:PF05631PhylomeDB:Q9CA11Proteomes:UP000006548RefSeq:NP_190500.2
SUPFAM:SSF103473TAIR:AT3G49310TMHMM:TMhelixUniGene:At.43599
UniProt:Q9CA11
Coordinates (TAIR10) chr3:-:18285084..18287991
Molecular Weight (calculated) 50882.50 Da
IEP (calculated) 6.74
GRAVY (calculated) 0.54
Length 460 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVFYYLVFG VMAAVVAALE LSKTNKDRIN TSSSFNSFKN NYLLVFSIMM AGDWLQGPYV YYLYSTYGFG KGDIGQLFIA GFGSSMLFGT IVGSLADKQG
101: RKRACVTYCI VYILSCITKH SPQYKVLMVG RILGGIATSL LFSAFESWLI AEHNKRNFEQ QWLSLTFSKA VFLGNGLVAI LSGLFGNLLV DTFSFGPVAP
201: FDAAACFLAI GMAIILGTWS ENFGDPSDSK DLLTQFKVAA IAIASDEKIA LLGAIQSLFE ASMYTFVFLW TPALSPNDEE IPHGFVFATF MLASMLGSSL
301: AARLMSRSSL RVENYMQIVF LVSAASLLLP ITTSVLVTPS KVKDEGLSLT SSIQLLGFCV FESCVGIFWP SIMKMRSQYI PEEARSTIMN FFRVPLNIFV
401: CIVLYNVDAF PITIMFGMCS IFLFVASILQ RRLMVISEKP KAEDWSPMKE RNSEVDPLTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)