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AT4G22330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18643979 (2008): endoplasmic reticulum
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Alkaline phytoceramidase (aPHC)
Curator
Summary (TAIR10)
Encodes AtCES1 for Acyl-CoA independent ceramide synthase.
Computational
Description (TAIR10)
ATCES1; FUNCTIONS IN: catalytic activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: ceramide metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ceramidase (InterPro:IPR008901); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111RPNeggNOG:KOG2329EMBL:AB063253EMBL:BT008549
EMBL:BT008652EMBL:CP002687EnsemblPlants:AT4G22330EnsemblPlants:AT4G22330.1
entrez:828328GeneID:828328GO:GO:0005634GO:GO:0005783
GO:GO:0005794GO:GO:0006672GO:GO:0009651GO:GO:0009814
GO:GO:0016021GO:GO:0016811GO:GO:0030148Gramene:AT4G22330.1
hmmpanther:PTHR12956hmmpanther:PTHR12956:SF28InterPro:IPR008901KEGG:ath:AT4G22330
KO:K04711OMA:LDIHFCDPfam:PF05875PhylomeDB:Q94IB9
PRO:PR:Q94IB9Proteomes:UP000006548Reactome:R-ATH-1660661RefSeq:NP_567660.1
STRING:3702.AT4G22330.1TAIR:AT4G22330tair10-symbols:ATCES1TMHMM:TMhelix
UniGene:At.23408UniGene:At.25097UniProt:Q94IB9
Coordinates (TAIR10) chr4:+:11798483..11799549
Molecular Weight (calculated) 29745.60 Da
IEP (calculated) 8.86
GRAVY (calculated) 0.26
Length 255 amino acids
Sequence (TAIR10)
(BLAST)
001: MADGISSFWG PVTSTIECCE MNYAYSSYIA EFYNTISNVP GILLALIGLV NALRQRFEKR FSILHISNMI LAIGSMLYHA TLQHVQQQSD ETPMVWEILL
101: YMYILYSPDW HYRSTMPTFL FLYGAAFAIV HAYLRFGIGF KVHYVILCLL CIPRMYKYYI HTEDTAAKRI AKWYVATILV GSICWFCDRV FCKTISQWPV
201: NPQGHALWHV FMSFNSYCAN TFLMFCRAQQ RGWNPKVKYF LGVLPYVKIE KPKTQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)