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AT5G60980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT3G25150.1); Has 35964 Blast hits to 15476 proteins in 1126 species: Archae - 10; Bacteria - 13365; Metazoa - 10215; Fungi - 3021; Plants - 4733; Viruses - 543; Other Eukaryotes - 4077 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YV57eggNOG:KOG0116EMBL:CP002688EnsemblPlants:AT5G60980
EnsemblPlants:AT5G60980.1entrez:836219ExpressionAtlas:F4K1Y4Gene3D:3.10.450.50
Gene3D:3.30.70.330GeneID:836219GO:GO:0000166GO:GO:0003676
GO:GO:0005622GO:GO:0006810Gramene:AT5G60980.1hmmpanther:PTHR10693
hmmpanther:PTHR10693:SF24InterPro:IPR000504InterPro:IPR002075InterPro:IPR012677
InterPro:IPR018222InterPro:IPR032710PaxDb:F4K1Y4Pfam:PF00076
Pfam:PF02136Pfscan:PS50102Pfscan:PS50177PRIDE:F4K1Y4
PROSITE:PS50102PROSITE:PS50177ProteinModelPortal:F4K1Y4Proteomes:UP000006548
RefSeq:NP_851235.1SMART:SM00360SMR:F4K1Y4STRING:3702.AT5G60980.2
SUPFAM:SSF54427SUPFAM:SSF54928TAIR:AT5G60980UniGene:At.27353
UniProt:F4K1Y4
Coordinates (TAIR10) chr5:+:24543988..24546027
Molecular Weight (calculated) 49418.00 Da
IEP (calculated) 5.81
GRAVY (calculated) -0.72
Length 459 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QGFCFGFVEF ETSSGKQSAL EASPVTIGDR QAVVEEKKTN SRGGGNNGGS RGRYFSGRGS FRNESFKGGR
401: GGGGRGGYGR GGGEFSGRPK SSNPRNGGEG YQRVPQNGGG GRGGRGEGGR GGARGGGSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)