AT5G12100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pentatricopeptide (PPR) repeat-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G65560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:3911388..3913838 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 91923.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 816 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVTRLRLVSR SSRYATVKFT DSVSACSCRR LFSASTDPEP ESQPEQAPPT NPVTGDEKLR NLRVLLQQNR IETARGVLSS LLRSDSTPFA SPKELFSAFS 101: LSSPSLKHDF SYLLLSVLLN ESKMISEAAD LFFALRNEGI YPSSDSLTLL LDHLVKTKQF RVTINVFLNI LESDFRPSKF MYGKAIQAAV KLSDVGKGLE 201: LFNRMKHDRI YPSVFIYNVL IDGLCKGKRM NDAEQLFDEM LARRLLPSLI TYNTLIDGYC KAGNPEKSFK VRERMKADHI EPSLITFNTL LKGLFKAGMV 301: EDAENVLKEM KDLGFVPDAF TFSILFDGYS SNEKAEAALG VYETAVDSGV KMNAYTCSIL LNALCKEGKI EKAEEILGRE MAKGLVPNEV IYNTMIDGYC 401: RKGDLVGARM KIEAMEKQGM KPDHLAYNCL IRRFCELGEM ENAEKEVNKM KLKGVSPSVE TYNILIGGYG RKYEFDKCFD ILKEMEDNGT MPNVVSYGTL 501: INCLCKGSKL LEAQIVKRDM EDRGVSPKVR IYNMLIDGCC SKGKIEDAFR FSKEMLKKGI ELNLVTYNTL IDGLSMTGKL SEAEDLLLEI SRKGLKPDVF 601: TYNSLISGYG FAGNVQRCIA LYEEMKRSGI KPTLKTYHLL ISLCTKEGIE LTERLFGEMS LKPDLLVYNG VLHCYAVHGD MEKAFNLQKQ MIEKSIGLDK 701: TTYNSLILGQ LKVGKLCEVR SLIDEMNARE MEPEADTYNI IVKGHCEVKD YMSAYVWYRE MQEKGFLLDV CIGNELVSGL KEEWRSKEAE IVISEMNGRM 801: LGDVTVDEDL SATEKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)