AT3G50690.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein A (TAIR:AT1G09760.1); Has 87837 Blast hits to 40058 proteins in 1793 species: Archae - 912; Bacteria - 10630; Metazoa - 29004; Fungi - 15487; Plants - 5654; Viruses - 1023; Other Eukaryotes - 25127 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:18835271..18837097 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49567.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 3.48 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.19 | ||||||||||||||||||||||||||||||||||||
| Length | 447 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDEIWERAVE AALDGQTDRL ATRTLTLDGA VKCVQGRLPP PSVLEKFQNL QHLSVANIGV SSLEQFPRLG NLQKLILSDN RITVGLEFLV EAGLDSFCDL 101: DLSNNRIQFV EDLAPLAELK LVSLDLYECP VTRLKDYRSR VFGLIKTLKY LDKTDAEGNE RPESDDEDDE EDEEDEEEEE EGDEEDPGSG EIDGDERAEA 201: PRMSNGHSER VDGVVDVDED EESDAEDDES EQATGVNGTS YRANGFRLEA VNGEEVREDD GDDSESGEEE VGEDNDVVEV HEIEDSENEE DGVDDEEDDE 301: EDEEEEEVDN ADRGLGGSGS TSRLMNAGEI DGHEQGDDDE DGDGETGEDD QGVEDDGEFA DEDDDVEEED EESGEGYLVQ PVSQVEDHDA VGNDIEPINE 401: DNDPDEEEEV EDDLPIPDQS LASSSRPKRK RDDDDDGEDD DDDDEER |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)