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AT4G35510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17540.3); Has 182 Blast hits to 179 proteins in 73 species: Archae - 0; Bacteria - 87; Metazoa - 17; Fungi - 9; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J07JeggNOG:ENOG410YYEXEMBL:AL031135EMBL:AL161587
EMBL:CP002687EnsemblPlants:AT4G35510EnsemblPlants:AT4G35510.1entrez:829703
GeneID:829703Gramene:AT4G35510.1hmmpanther:PTHR35477hmmpanther:PTHR35477:SF1
HOGENOM:HOG000090618KEGG:ath:AT4G35510OMA:MADCKERPhylomeDB:O81784
PIR:T04656Proteomes:UP000006548RefSeq:NP_195276.3STRING:3702.AT4G35510.1
TAIR:AT4G35510UniGene:At.2405UniProt:O81784
Coordinates (TAIR10) chr4:-:16860712..16861713
Molecular Weight (calculated) 35967.20 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.72
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: METNPCDMNQ LDSDSHLPPR KRLLAGFKKF NSNGINGSSP SDFASSSSTS NSNGSSSAST NVQTHLGNLL SSPFNNDQSP EELVEATRSA AALAVKAAKA
101: ARAIANEKAL ISAKAIAAAK RALELVDSFP KEAMADCKER SPRKNKQKKH VPVELLYSKG QLRDEEDDLA RRLHRAIDNT SYPRVLRTSE ENGQRYKKQK
201: KNKSVVEGGS SSIIVTGSMK DIAGVVDSDS SYEGLEIARS NRDEADSMLM MEKSGEESNS LVKRRGRVKL KKLPLSICNS RNQENGTSSA SPLPVAQPQE
301: DGGAITVIAG SSSWKCQDIK APECVKQNKA VRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)