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AT3G03550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to karrikin; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G17600.1); Has 9886 Blast hits to 9859 proteins in 306 species: Archae - 0; Bacteria - 2; Metazoa - 2318; Fungi - 804; Plants - 5150; Viruses - 98; Other Eukaryotes - 1514 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK228047EnsemblPlants:AT3G03550
EnsemblPlants:AT3G03550.1entrez:821237ExpressionAtlas:Q0WS90Gene3D:3.30.40.10
GeneID:821237GO:GO:0008270GO:GO:0016021Gramene:AT3G03550.1
hmmpanther:PTHR14155hmmpanther:PTHR14155:SF159InterPro:IPR001841InterPro:IPR013083
KEGG:ath:AT3G03550OMA:ISSDYTWPaxDb:Q0WS90Pfam:PF13639
Pfam:Q9SRQ8Pfscan:PS50089PhylomeDB:Q0WS90PRIDE:Q0WS90
PROSITE:PS50089ProteinModelPortal:Q0WS90RefSeq:NP_566208.1SMART:SM00184
SMR:Q0WS90SUPFAM:SSF57850TAIR:AT3G03550TMHMM:TMhelix
UniGene:At.44888UniProt:Q0WS90UniProt:Q9SRQ8
Coordinates (TAIR10) chr3:-:850391..851461
Molecular Weight (calculated) 38859.80 Da
IEP (calculated) 4.55
GRAVY (calculated) -0.51
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSTGNPNPW GTTYDSYRDC SQGVCSVYCP QWCYVIFPPP PSFYLDDEDD SSSSDFSPLL IALIGILASA FILVSYYTLI SKYCHRRRHN SSSTSAAAIN
101: RISSDYTWQG TNNNNNNGAT NPNQTIGGGG GDGLDESLIK SITVYKYRKM DGFVESSDCS VCLSEFQENE SLRLLPKCNH AFHVPCIDTW LKSHSNCPLC
201: RAFIVTSSAV EIVDLTNQQI VTENNSISTG DDSVVVVNLD LENSRSRNET VNEGSTPKPP EMQDSRDGEE RRSASLNSGG GVVSIADILR EIEDDEESAG
301: VGTSRWVEEG EGEKTPPPSG SAANQTNGIS NFLVRSSMAA MKRSGYDRAK NYRLPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)