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AT3G51580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0ZXeggNOG:ENOG411259VEMBL:AL133452EMBL:BT030020
EMBL:CP002686EnsemblPlants:AT3G51580EnsemblPlants:AT3G51580.1entrez:824321
ExpressionAtlas:Q9SCZ1GeneID:824321GO:GO:0016021Gramene:AT3G51580.1
hmmpanther:PTHR34200hmmpanther:PTHR34200:SF1HOGENOM:HOG000153453PhylomeDB:Q9SCZ1
PIR:T45789Proteomes:UP000006548RefSeq:NP_190726.1TAIR:AT3G51580
TMHMM:TMhelixUniGene:At.42982UniProt:Q9SCZ1
Coordinates (TAIR10) chr3:-:19131167..19133016
Molecular Weight (calculated) 42018.90 Da
IEP (calculated) 4.47
GRAVY (calculated) -0.59
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRSSVLTLL LLILFISNAS SFDRFRELVD EETQKDNSNS TTKQESPLIN PQPIGDGKSN VTSSEPTLPT SNSTNTNPKE PDSMSPPPPL IPVNEKNDTK
101: VLNTTEPMSP PPPPANLTDS QDSGKLPANM APPPKSLESG KNETEPGKES PPLAKDPAKG KDDKGSSESA SVDTCVGKSN ICRTENSLVA CTLSIDKGAA
201: NWLILVQNEG ETSLKAKIVL PVNALQELTL PKHQSQKVNI SISGDTNKII LDTGKGQCAL HMYPSEESTL PFHFPSYEKL VTPINGAYFL IVSVIIFGGI
301: WAFCLCRKNR RAGSGVPYRE LELSGGPGLE NESGVHDVET ADWDEGWDDD WDENNAVKSP GSAAKSVSIS ANGLTARAPN RDGWDHDWDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)