AT5G20680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRICHOME BIREFRINGENCE-LIKE 16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRICHOME BIREFRINGENCE-LIKE 16 (TBL16); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 14 (TAIR:AT5G64020.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6998946..7001596 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62319.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.44 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 551 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNETFSATPR SMTIHRYRMK RGALRRRARD ISVMLVVLVC ATVVIWTWDR TPTSAFLPPE SHYLKLQSEE KVEKLPTALN TETKDSYSSA IPFVNKEESK 101: EDSSDNKDTE EEEEKQVEEV TVSNTNRGKI PTIEEKKGEH EVIASEPKYR KTPTREDFKL EKVKHEVAVG EGEATETTHI KETNSDPKSN ILATDEERTD 201: GTSTARITNQ ACNYAKGKWV VDNHRPLYSG SQCKQWLASM WACRLMQRTD FAFESLRWQP KDCSMEEFEG SKFLRRMKNK TLAFVGDSLG RQQFQSMMCM 301: ISGGKERLDV LDVGPEFGFI TPEGGARPGG WAYRFPETNT TVLYHWSSTL CDIEPLNITD PATEHAMHLD RPPAFLRQYL QKIDVLVMNT GHHWNRGKLN 401: GNKWVMHVNG VPNTNRKLAA LGNAKNFTIH STVSWVNSQL PLHPGLKAFY RSLSPRHFVG GEWNTGGSCN NTTPMSIGKE VLQEESSDYS AGRAVKGTGV 501: KLLDITALSH IRDEGHISRF SISASRGVQD CLHWCLPGVP DTWNEILFAM I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)