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AT3G47700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RINT-1 / TIP-1 family
Curator
Summary (TAIR10)
Involved in transportation of seed storage proteins from the ER to the vacuole. Mutant seed cell accumulates the precursors of 12S globulin and 2S albumin instead of the vacuolar-located mature proteins.
Computational
Description (TAIR10)
maigo2 (MAG2); CONTAINS InterPro DOMAIN/s: RINT-1/TIP-1 (InterPro:IPR007528); BEST Arabidopsis thaliana protein match is: RINT-1 / TIP-1 family (TAIR:AT1G08400.1); Has 297 Blast hits to 297 proteins in 143 species: Archae - 16; Bacteria - 48; Metazoa - 107; Fungi - 71; Plants - 47; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioGrid:9244eggNOG:ENOG410XZD1eggNOG:KOG2218EMBL:AL049746
EMBL:AY093173EMBL:CP002686EnsemblPlants:AT3G47700EnsemblPlants:AT3G47700.1
entrez:823924GeneID:823924Genevisible:Q9STU3GO:GO:0005829
GO:GO:0006623GO:GO:0006888GO:GO:0042406Gramene:AT3G47700.1
hmmpanther:PTHR13520hmmpanther:PTHR13520:SF1HOGENOM:HOG000242524InParanoid:Q9STU3
InterPro:IPR007528KEGG:ath:AT3G47700ncoils:CoilOMA:DCLLLRC
PaxDb:Q9STU3Pfam:PF04437Pfam:Q9STU3Pfscan:PS51386
PhylomeDB:Q9STU3PIR:T07709PRIDE:Q9STU3PRO:PR:Q9STU3
PROSITE:PS51386ProteinModelPortal:Q9STU3Proteomes:UP000006548RefSeq:NP_190354.1
STRING:3702.AT3G47700.1TAIR:AT3G47700tair10-symbols:MAG2UniGene:At.35780
UniProt:Q9STU3
Coordinates (TAIR10) chr3:-:17583773..17586578
Molecular Weight (calculated) 90237.50 Da
IEP (calculated) 5.19
GRAVY (calculated) -0.27
Length 795 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAIKPLPQV SSFSASVFSF LDGRFKESTD LSHSTGLVSE LQTEISELDQ RLAGLNRQLE SGLAAYASFS DRVGGLFFEV NAKLADLSSS TSVTRSASDS
101: GKEEEATEHV AGEDLPSLAK EVAQVESVRA YAETALKLDT LVGDIEDAVM SSLNKNLRTS RSSGFEEVRL HAIKTLKTTE EILSSVAKRH PRWARLVSAV
201: DHRVDRALAM MRPQAIADYR ALLSSLRWPP QLSTLTSASL DSKSENVQNP LFNMEGSLKS QYCGSFHALC SLQGLQLQRK SRQLGIHKGE NVLFHQPLWA
301: IEELVNPLTV ASQRHFTKWS EKPEFIFALV YKITRDYVDS MDELLQPLVD EAKLAGYSCR EEWVSAMVSS LSLYLVKEIF PIYVGQLDEA NETDLRSEAK
401: VSWLHLIDLM ISFDKRVQSL VSQSGILSLQ EDGNLLRISS LSVFCDRPDW LDLWAEIELD ERLVKFKEEI DNDRNWTAKV QDELISSSNV YRPPIISSIF
501: LQHLSSIIER SKSVPALYLR ARFLRLAASP TIHKFLDCLL LRCQDADGLT ALTENNDLIK VSNSINAGHY IESVLEEWSE DVFFLEMGTG QHDPQEVPGL
601: ENFTEPSEGI FGEEFEKLEK FRLEWINKLS VVILRGFDAR IREYIKNRKQ WQEKKDKEWT VSRALVGALD YLQGKTSIIE ENLNKADFTA MWRTLASEID
701: KLFFNSILMA NVKFTNDGVE RLKVDMEVLY GVFRTWCVRP EGFFPKLSEG LTLLKMEEKQ VKDGLSRGDK WLRENRIRYL SEAEAKKVAK SRVFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)