AT4G22580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.857 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Exostosin family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT4G13990.1); Has 709 Blast hits to 706 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 670; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11889382..11890689 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50363.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.74 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||
| Length | 435 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASKSTVTTL TIFFFFFFFF IEPKVQSQQI SAVDSECTNR WIHIRTLPSR FNLDLLSTCN RYPITDDLCP YLANHGLGPK THTRTRSWYR TDPLLLELIF 101: HRRILEYPCL TPDPNLASAI YLPYYAGIDS LRYLYGPDLN SSADHGSDLL EFLTRDQPEI WSRRSGHDHF LVMARPAWDF SQPLTVDPPI WGTSFLERRE 201: FFNLTALTLE SRYWPWQEQA VPYPTSFHPH SLPFLESWIR RVRRSRRTSL MLFAGGGGTS SSPNIRRSIR LECTSINATQ SDNKICDFVD CSNGICEHDP 301: IRFMRPMLQS SFCLQPPGDT PTRKATFDGI IAGCIPVFFE DQTAKMQYKW HLPESEFAEF SVTIPKEDVV FRGVRIQDVL MSIPKEEVTR MRERVIEMMP 401: RVMYRRHGAS MGLMNKKDAV DIAIDGVLDR IISRV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)