AT3G51340.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.685 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Eukaryotic aspartyl protease family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase aspartic (InterPro:IPR021109), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G51350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:19057013..19059788 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 58002.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.74 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 530 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNVARQVFVL LSMLVLIFWG LERCEASGKF SFEVHHMFSD VVKQTLGFDD LVPENGSLEY FKVLAHRDRF IRGRGLASNN EETPLTSIGS NLTLALNFLG 101: FLHYANVSLG TPATWFLVAL DTGSDLFWLP CNCGTTCIHD LKDARFSESV PLNLYTPNAS TTSSSIRCSD KRCFGSGKCS SPESICPYQI ALSSNTVTTG 201: TLLQDVLHLV TEDEDLKPVN ANVTLGCGQN QTGAFQTDIA VNGVLGLSMK EYSVPSLLAK ANITANSFSM CFGRIISVVG RISFGDKGYT DQEETPLVSL 301: ETSTAYGVNV TGVSVGGVPV DVPLFALFDT GSSFTLLLES AYGVFTKAFD DLMEDKRRPV DPDFPFEFCY DLREEHLNSD ARPRHMQSKC YNPCRDDFRW 401: RIQNDSQESV SYSNEGTKMY CLGILKSINL NIIGQNLMSG HRIVFDRERM ILGWKQSNCF EDESLASESP PPPEIEAPPP SVSTPPPAAS ATPPTIDPRN 501: STRNSGTGGA ANLSPLAAQL LFLLPLLAFL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)