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AT4G15070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.947
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G48320.1); Has 1561 Blast hits to 653 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 1537; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
EMBL:AL161540EMBL:CP002687EMBL:Z97337EnsemblPlants:AT4G15070
EnsemblPlants:AT4G15070.1entrez:827170GeneID:827170GO:GO:0005622
GO:GO:0035556GO:GO:0047134Gramene:AT4G15070.1hmmpanther:PTHR32410
hmmpanther:PTHR32410:SF152HOGENOM:HOG000064693InterPro:IPR004146InterPro:IPR011424
KEGG:ath:AT4G15070Pfam:PF03107Pfam:PF07649PhylomeDB:O23361
PIR:D71414Proteomes:UP000006548RefSeq:NP_193243.1STRING:3702.AT4G15070.1
SUPFAM:SSF57889TAIR:AT4G15070UniGene:At.65380UniProt:O23361
Coordinates (TAIR10) chr4:-:8603424..8606141
Molecular Weight (calculated) 102255.00 Da
IEP (calculated) 5.49
GRAVY (calculated) -0.30
Length 889 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSNSNPESK LKSFILQISS FSESWNPYLG FDPEWDSISK MISTITQTIS LVSSIDFDSQ PESKLMSLTN EAVYVFNSMD LDSQPDPLMK LISLISQKVS
101: LVNSTDLISE QDTDSAPDLE IFMLLIQESF SLTPEPELIS LINQIISHVV FRQRQSESMP DLEAELEPEP DSEPESEPEI DLEMNLISLI TQLISQPITL
201: SLKIYLIPQI ISMVSKMDFD LQPETEFVSL TNQAVSLFKS MDLDSQPDPL RNLISLISEE ITHAKSIRVL KRNQDLKLKL GRTTLEPMIL ARHFNPETDS
301: GTKFLWRNSN SSTDSDTKLL ELDSNSDRYV HIKPLEPDSN SDTDLDLYCK TMSLDSYLMS LVGETLRLEP EPKFISLIYQ IFSLVISMNS VWKRLIFLYP
401: QVQVKLEKGK FHVIEEVSWS SKGKWKCLPL DWKRIRITEE GLCHIHCQTC NVDNHGEYEK APVMIKHALH PNHSLQLVLL NGDTTRESCD YAMNIACVEK
501: PRVLSLDQPK WHEHTLTQFP RKTSVTCNVC SLAYSSCPFY ICPPCDFVVH QKCLSLPRVI RISRHFHRIY FTLSFDQGVR CCGVCRRKID NDYGGYSCKK
601: DGCSYVAHSK CATQSNVWDG KELEGEPEED INEIEPFVTL RDGSIRHFSH EHHRLKLDEN TSRDYNENKL CQACITPIYF GNVYSCMQCD FSLHEECAKL
701: SRKTHHPVHP HLLTLVGKSD IMDATKSCSV CPWKCTTGFF YECRERECRF KVHVQCATIY EPLVHESHMD PLFLTSKPGE ERRCCVCKEL GHCSTNETFN
801: CIECDFALCF KCATLPHKVR YKHDKHMLTL SYGEETSTIP NWCEVCEKKI KSKERFYMCD EYCCVTLHIE CMLGVDLLYE AWFILVLPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)