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AT3G15620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA photolyase family protein
Curator
Summary (TAIR10)
Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana.
Computational
Description (TAIR10)
UV REPAIR DEFECTIVE 3 (UVR3); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101); BEST Arabidopsis thaliana protein match is: cryptochrome 2 (TAIR:AT1G04400.1); Has 8860 Blast hits to 8829 proteins in 1491 species: Archae - 102; Bacteria - 3068; Metazoa - 397; Fungi - 149; Plants - 721; Viruses - 0; Other Eukaryotes - 4423 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2758-MONOMERBioCyc:ARA:GQT-2759-MONOMERBioCyc:MetaCyc:MONOMER-15021BRENDA:4.1.99.13
EC:4.1.99.13eggNOG:COG0415eggNOG:KOG0133EMBL:AB003687
EMBL:AB017071EMBL:AB017331EMBL:CP002686EnsemblPlants:AT3G15620
EnsemblPlants:AT3G15620.1entrez:820804EvolutionaryTrace:O48652Gene3D:3.40.50.620
GeneID:820804Genevisible:O48652GO:GO:0000166GO:GO:0003677
GO:GO:0003914GO:GO:0006281GO:GO:0009411hmmpanther:PTHR11455
hmmpanther:PTHR11455:SF9HOGENOM:HOG000245622InParanoid:O48652InterPro:IPR005101
InterPro:IPR006050InterPro:IPR014729KEGG:ath:AT3G15620KO:K02295
ncoils:CoilOMA:GIPNFNKPaxDb:O48652PDB:3FY4
PDBsum:3FY4Pfam:O48652Pfam:PF00875Pfam:PF03441
Pfscan:PS51645PhylomeDB:O48652PRIDE:O48652PRO:PR:O48652
PROSITE:PS51645ProteinModelPortal:O48652Proteomes:UP000006548RefSeq:NP_001030703.1
RefSeq:NP_566520.1SMR:O48652STRING:3702.AT3G15620.1SUPFAM:SSF48173
SUPFAM:SSF52425TAIR:AT3G15620tair10-symbols:UVR3UniGene:At.188
UniProt:O48652
Coordinates (TAIR10) chr3:-:5293475..5296548
Molecular Weight (calculated) 63793.60 Da
IEP (calculated) 8.99
GRAVY (calculated) -0.46
Length 556 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRFCVCSPS SYRLNPITSM ATGSGSLIWF RKGLRVHDNP ALEYASKGSE FMYPVFVIDP HYMESDPSAF SPGSSRAGVN RIRFLLESLK DLDSSLKKLG
101: SRLLVFKGEP GEVLVRCLQE WKVKRLCFEY DTDPYYQALD VKVKDYASST GVEVFSPVSH TLFNPAHIIE KNGGKPPLSY QSFLKVAGEP SCAKSELVMS
201: YSSLPPIGDI GNLGISEVPS LEELGYKDDE QADWTPFRGG ESEALKRLTK SISDKAWVAN FEKPKGDPSA FLKPATTVMS PYLKFGCLSS RYFYQCLQNI
301: YKDVKKHTSP PVSLLGQLLW REFFYTTAFG TPNFDKMKGN RICKQIPWNE DHAMLAAWRD GKTGYPWIDA IMVQLLKWGW MHHLARHCVA CFLTRGDLFI
401: HWEQGRDVFE RLLIDSDWAI NNGNWMWLSC SSFFYQFNRI YSPISFGKKY DPDGKYIRHF LPVLKDMPKQ YIYEPWTAPL SVQTKANCIV GKDYPKPMVL
501: HDSASKECKR KMGEAYALNK KMDGKVDEEN LRDLRRKLQK DEHEESKIRN QRPKLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)