AT5G43630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc knuckle (CCHC-type) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a zinc knuckle protein that negatively regulates morning specific growth. The role of TZP in hypocotyl elongation was established through a QTL analysis of BayXSha RIL populations. The Bay-0 allele contains a deletion causing a frameshift mutation. TZP is under circadian control and acts to regulate morning-specific hypocotyl growth. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TZP; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: growth, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), Plus-3 (InterPro:IPR004343), Zinc finger, CCHC-type (InterPro:IPR001878); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17527261..17530207 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90618.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.99 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 831 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDGDEQSKE LGGVSSSSRR CSSGTAGAAN AEARMKFAAV DAITELVWSP SNGLSLRCAD ISFTGKAKLL SPNFFDIGLT NMAIHSNSTS IEDQEDHVDV 101: ELRNRDQVNQ AMIGGSVEDM KPEMVEDKVE TNDDIKNEEA GCSKRSSDSP KAMEGETRDL LVNEQLRMES AGSQEEGDKA HNRVDRLESM DENNLATLAV 201: VACEGKGDYL PEGEAGPSGS YRRREKAKGK EKALSDENFG GDGEDEDEES FGSVESCNSA GLLSRGKKRP GFEEQLIFGS KRLKTLNQEC LGSTSKLKQD 301: SSFMNWISNM TKGIWKGNEE DNSPFVALTT TSNANGHGQV NAIVDQQQLS PCCVKENSGC RNTGFQSFFQ SIYCPKKQSQ DVVDMDFPND VNAAPLQELP 401: WIPEHCDISK GDDLSSSGNE IGPVAEPNIS SGKVVFNQTS KTQSSENKRE DKEPNISLMS LSKSKPNEEP KTCGEADGKV SPCLTNRNSG LKSLWISRFS 501: SKGSFPQKKA SETAKEANAS ASDAAKTRDS RKMLADKNVI RPSISSVDGP DKPDTVLPIV SSMRIESSEA MASLFARRLE AMKSIMPSGS LAENAEEEQR 601: DLICFYCGKK GHCLRDCLEV TDTELRDLVQ NISVRNGREE ASSLCIRCFQ LSHWAATCPN APLYGSGAEG RAMKNALAST SGMKLPISGF TDVPRAVFDA 701: VQVLRLSRTD VLKWINTKKS VSGLEGFFLR LRLGKWEEGL GGTGYYVARI DGDTEGQSSR RHSEKSLISV KVKGVTCLVE SQFISNQDFL EEELKAWWQS 801: AGKSARTSGY DGIPSAEELS RKIQQRKMLG F |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)