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AT1G75540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : salt tolerance homolog2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
salt tolerance homolog2 (STH2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT4G39070.1); Has 3177 Blast hits to 2249 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 43; Plants - 2068; Viruses - 0; Other Eukaryotes - 1046 (source: NCBI BLink).
Protein Annotations
BioGrid:29109eggNOG:ENOG410II94eggNOG:ENOG410YIAMEMBL:AB493536
EMBL:AC006434EMBL:CP002684EnsemblPlants:AT1G75540EnsemblPlants:AT1G75540.1
entrez:843890GeneID:843890Genevisible:Q9LQZ7GO:GO:0000989
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0008270GO:GO:0009640GO:GO:0009641Gramene:AT1G75540.1
hmmpanther:PTHR31832hmmpanther:PTHR31832:SF6HOGENOM:HOG000239240InParanoid:Q9LQZ7
IntAct:Q9LQZ7InterPro:IPR000315KEGG:ath:AT1G75540OMA:ISEYLMD
PaxDb:Q9LQZ7Pfam:PF00643Pfam:Q9LQZ7Pfscan:PS50119
PhylomeDB:Q9LQZ7PIR:G96785PRIDE:Q9LQZ7PRO:PR:Q9LQZ7
PROSITE:PS50119ProteinModelPortal:Q9LQZ7Proteomes:UP000006548RefSeq:NP_177686.1
SMART:SM00336SMR:Q9LQZ7STRING:3702.AT1G75540.1SUPFAM:SSF57845
TAIR:AT1G75540tair10-symbols:STH2UniGene:At.34761UniGene:At.69592
UniProt:Q9LQZ7
Coordinates (TAIR10) chr1:+:28366059..28367398
Molecular Weight (calculated) 36635.40 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.74
Length 331 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIRCDVCDK EEASVFCTAD EASLCGGCDH QVHHANKLAS KHLRFSLLYP SSSNTSSPLC DICQDKKALL FCQQDRAILC KDCDSSIHAA NEHTKKHDRF
101: LLTGVKLSAT SSVYKPTSKS SSSSSSNQDF SVPGSSISNP PPLKKPLSAP PQSNKIQPFS KINGGDASVN QWGSTSTISE YLMDTLPGWH VEDFLDSSLP
201: TYGFSKSGDD DGVLPYMEPE DDNNTKRNNN NNNNNNNNTV SLPSKNLGIW VPQIPQTLPS SYPNQYFSQD NNIQFGMYNK ETSPEVVSFA PIQNMKQQGQ
301: NNKRWYDDGG FTVPQITPPP LSSNKKFRSF W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)