AT3G18770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Autophagy-related protein 13 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Autophagy-related protein 13; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G49590.1); Has 480 Blast hits to 395 proteins in 141 species: Archae - 0; Bacteria - 18; Metazoa - 72; Fungi - 154; Plants - 106; Viruses - 7; Other Eukaryotes - 123 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6460026..6462510 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69457.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.17 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||
| Length | 625 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSHNRSNN NNSEGAKAEQ IIFEFFAKSL HIILESRTPF MSSRNFSGEQ MICSPSSSSS SSSSVRPRDK WFNLALRECP AALESFDIGR RSSLEPLVVD 101: VVLVVRPLVG DQSGKRELIR NFSGKDYQSG WNSDQDELGC ETKNEQIIER WVVQYDNRKI RESVTTSSRR SSSNKLQVMY KKATLLLRSL FVMVRLLPAY 201: KIFRELNSSG QIFKFKLVPR VPSIVEPFTR KEEAEMQKFS FTPVETICGR LCLSVLYRSL SDVSCEHSTP MSPTFITDYV GSPLADPLKR FPSLPLSYGS 301: PPLLPFQRRH SWSFDRYKAS PPSVSCSPSP TRSDSHALVS HPCSRHLPPH PSDIPTGRRK ESYPEEYSPC QDFSPPPSPS APKHAVPRGI TRTESAPVRI 401: PAPTFQSKEN VVAPSAHLKL SRHASLKPVR NLGPGESGAA IDKLFLYGRD DFRRPSGVRP SSSSSPRISF SRSSSRSFQD DFDDPDFPCP FDVEYDDITD 501: RNSRPGSFDH RGDIHEPFDS SGSYPKKSQD AAVGALVRML KKAPPLRQDV SESSRPEICS NNNKPAGAHE IAVASITASG IALASKTTAD ALEELRSYKE 601: MKNHLLLGQS TSNPSSVTIT SPFDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)