AT5G55600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22522232..22524796 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75435.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.87 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||
| Length | 663 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCENDHHFVE WKEHFVSQER GNRVVHYFLK DSAGESILAV IGTERSVRHM FYVVSEEFVR IHGPENSIHS GFKWRSRREV VDWLTSMLSK QSTQGNWSKS 101: PKCESGESNG SPEFPSNGFT AQRAQASEEV RLPINLIIHS WEIMWSGAPW MCGKQLKHYP SFCRNGTTIG VQSFVFVLSK GEDRYVAYLE DMYEDKRGLK 201: KVKVRWFHYT KEVKGAVALK NPNPKEVFIT PHSQVISAEC VDGPATVLTR EHYEECVASF PNSLLARVHM CYRQLRNSKV KPFDLSKLRG YLDQPIMSCL 301: SSMEAGPVDC AMNIEEDEEW SEGENVMVGA ERSMKKRARI MSDHLLTTYE SSCKRLKLNA SGKRFPSPTN VQKHPCYNGV VKTDAKIEFL CQDSGIRGCW 401: FRCTVLDVSR KQVKLQYDDI EDEDGYGNLE EWVPAFKSAM PDKLGIRLSN RPTIRPAPRD VKTAYFDLTI GEAVDAWWND GWWEGVVIAT GKPDTEDLKI 501: YIPGENLCLT VLRKDIRISR DWVGDSWVDI DPKPEILAIV SSDSSSESKL SMLSTLSKDT KAKPSAMPNI VEEAEPEGEK AYNSLLGEQN KEHKDVVVKE 601: DDENKLSKEE DKEVGSNETK TYVNHENTVE DHKEDDVTLN DEKARKSESV FTLSKTTTTL VTT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)