AT5G61420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myb domain protein 28 | ||||||||||||
| Curator Summary (TAIR10) |
Encodes a nuclear localized member of the MYB transcription factor family. Involved in positive regulation of aliphatic glucosinolate biosynthesis.Expression is induced by touch, wounding and glucose. | ||||||||||||
| Computational Description (TAIR10) |
myb domain protein 28 (MYB28); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 76 (TAIR:AT5G07700.1); Has 5906 Blast hits to 5134 proteins in 359 species: Archae - 0; Bacteria - 112; Metazoa - 464; Fungi - 135; Plants - 4393; Viruses - 3; Other Eukaryotes - 799 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24689475..24690478 | ||||||||||||
| Molecular Weight (calculated) | 32045.70 Da | ||||||||||||
| IEP (calculated) | 4.92 | ||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||
| Length | 287 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLHASRGNKW SVIARHLPRR TDNEIKNYWN THLKKRLMEQ GIDPVTHKPL ASSSNPTVDE NLNSPNASSS DKQYSRSSSM PFLSRPPPSS CNMVSKVSEL 101: SSNDGTPIQG SSLSCKKRFK KSSSTSRLLN KVAAKATSIK DILSASMEGS LSATTISHAS FFNGFTEQIR NEEDSSNTSL TNTLAEFDPF SPSSLYPEHE 201: INATSDLNMD QDYDFSQFFE KFGGDNHNEE NSMNDLLMSD VSQEVSSTSV DDQDNMVGNF EGWSNYLLDH TNFMYDTDSD SLEKHFI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)