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AT5G63110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : histone deacetylase 6
Curator
Summary (TAIR10)
RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.
Computational
Description (TAIR10)
histone deacetylase 6 (HDA6); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: response to salt stress, gene silencing, posttranscriptional gene silencing, response to abscisic acid stimulus, histone deacetylation; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8759 Blast hits to 8549 proteins in 1444 species: Archae - 221; Bacteria - 3162; Metazoa - 1525; Fungi - 546; Plants - 480; Viruses - 0; Other Eukaryotes - 2825 (source: NCBI BLink).
Protein Annotations
EC:3.5.1.98eggNOG:COG0123eggNOG:KOG1342EMBL:AF195548
EMBL:EU502909EMBL:EU502910EnsemblPlants:AT5G63110EnsemblPlants:AT5G63110.1
entrez:836431ExpressionAtlas:B1PXB9Gene3D:3.40.800.20GeneID:836431
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0032041
Gramene:AT5G63110.1hmmpanther:PTHR10625hmmpanther:PTHR10625:SF109InterPro:IPR000286
InterPro:IPR003084InterPro:IPR023801KEGG:ath:AT5G63110KO:K06067
OMA:TGHIRDVPANTHER:PTHR10625Pfam:PF00850Pfam:Q9FML2
PhylomeDB:B1PXB9PIRSF:PIRSF037913PRINTS:PR01270PRINTS:PR01271
RefSeq:NP_201116.1SMR:B1PXB9STRING:3702.AT5G63110.1SUPFAM:SSF52768
TAIR:AT5G63110tair10-symbols:ATHDA6tair10-symbols:AXE1tair10-symbols:HDA6
tair10-symbols:RPD3Btair10-symbols:RTS1tair10-symbols:SIL1UniGene:At.8834
UniProt:B1PXB9UniProt:Q9FML2
Coordinates (TAIR10) chr5:-:25315834..25318227
Molecular Weight (calculated) 52654.70 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.49
Length 471 amino acids
Sequence (TAIR10)
(BLAST)
001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)