AT3G02710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.977 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with a putative role in mRNA splicing. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1716, eukaryotic (InterPro:IPR013180), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 346 Blast hits to 342 proteins in 158 species: Archae - 0; Bacteria - 2; Metazoa - 149; Fungi - 94; Plants - 41; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:583184..585780 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60149.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.74 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||
| Length | 529 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVSNQTRKR KAIDAGHGSQ PTAYRGSDGV DLSLLEALEK SSHNGVEALD LKTLKKLVLS FERRLRDNIA ARLKYVENPE KFADSEVDLH DDLQKLKVLA 101: GAPELYPDLV ASNTVPSIVN LLSHENSDIA NDVVQLLQDL TDEDALEDND EPARVLVDAL VENNVLELLV QNMNRLSEAD PDEATAIYAT LTVIENLVEV 201: KPAVAQLVCE RTKLLRWLLT KIKVREFEGI KQYASEILAI LLQNSTANQK RLGQMNGVDA VLEGVAMYKS KDPKTPDEEE MLENLFDCLC CLLMPLENKE 301: RFVNAEGVEL MIIIMKQKKY AYGSAIRALD FAMTNYPPAC ERFVDVMGLK TAFAAFMGKI PLNKRIKRER YKEELEERVI SLIASLFAGI LRGSRRDRLL 401: SKFVENEFEK IDRLMELYLR YSDRVRSEAE RLDQLELDDL ELDEDEKYNR KLESGLYSLQ LVAVILGHIW CSEHSGMRAR VELLLKQQKL SKTDVKQILQ 501: EYHDNIGDLD GAEEKERGQA RIQLFISAM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)