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AT3G22330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : putative mitochondrial RNA helicase 2
Curator
Summary (TAIR10)
DEAD-box protein required for efficient group II intron splicing in mitochondria.
Computational
Description (TAIR10)
putative mitochondrial RNA helicase 2 (PMH2); FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: response to cold, Group II intron splicing; LOCATED IN: mitochondrion, nucleolus, cell wall, protein complex; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase (RH3) (TAIR:AT5G26742.2); Has 113280 Blast hits to 72794 proteins in 3598 species: Archae - 1390; Bacteria - 52148; Metazoa - 22767; Fungi - 9352; Plants - 8202; Viruses - 661; Other Eukaryotes - 18760 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2477-MONOMEREC:3.6.4.13eggNOG:COG0513eggNOG:KOG0331
EMBL:AB022215EMBL:AY062502EMBL:AY093256EMBL:CP002686
EnsemblPlants:AT3G22330EnsemblPlants:AT3G22330.1entrez:821802Gene3D:3.40.50.300
GeneID:821802Genevisible:Q9LUW5GO:GO:0000373GO:GO:0003723
GO:GO:0004004GO:GO:0005524GO:GO:0005618GO:GO:0005730
GO:GO:0005739GO:GO:0009409GO:GO:0010501GO:GO:0043234
Gramene:AT3G22330.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF326HOGENOM:HOG000268800
InParanoid:Q9LUW5InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001
InterPro:IPR014014InterPro:IPR027417iPTMnet:Q9LUW5KEGG:ath:AT3G22330
OMA:INQQMRVPaxDb:Q9LUW5Pfam:PF00270Pfam:PF00271
Pfam:Q9LUW5Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195
PhylomeDB:Q9LUW5PRIDE:Q9LUW5PRO:PR:Q9LUW5PROSITE:PS51192
PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q9LUW5Proteomes:UP000006548
RefSeq:NP_188872.2SMART:SM00487SMART:SM00490SMR:Q9LUW5
STRING:3702.AT3G22330.1SUPFAM:SSF52540TAIR:AT3G22330tair10-symbols:ATRH53
tair10-symbols:PMH2UniGene:At.27322UniProt:Q9LUW5
Coordinates (TAIR10) chr3:+:7892641..7895145
Molecular Weight (calculated) 65363.30 Da
IEP (calculated) 9.73
GRAVY (calculated) -0.31
Length 616 amino acids
Sequence (TAIR10)
(BLAST)
001: MITTVLRRSL LDASKRNLSA SLTSINTVLF HNLAPAATRV SDLALIGSSD VKAGFPFGVE AKGIHFQSGP LDFRASMVSQ AGFAISESSE RRVGDSESVG
101: GDGLAISELG ISPEIVKALS SKGIEKLFPI QKAVLEPAME GRDMIGRART GTGKTLAFGI PIIDKIIKYN AKHGRGRNPL CLVLAPTREL ARQVEKEFRE
201: SAPSLDTICL YGGTPIGQQM RQLDYGVDVA VGTPGRVIDL MKRGALNLSE VQFVVLDEAD QMLQVGFAED VEIILEKLPE KRQSMMFSAT MPSWIRSLTK
301: KYLNNPLTVD LVGDSDQKLA DGITTYSIIA DSYGRASIIG PLVTEHAKGG KCIVFTQTKR DADRLSYALA RSFKCEALHG DISQSQRERT LAGFRDGHFN
401: ILVATDVAAR GLDVPNVDLI IHYELPNNTE TFVHRTGRTG RAGKKGSAIL IYSQDQSRAV KIIEREVGSR FTELPSIAVE RGSASMFEGI GSRSGGSFGG
501: GMRDRGSSFG GRSGGGGYGG SSGGYGGGRS GGSSNRYSGD SDRSGFGSFG MRSPEGYGSD RSSQSGGRSS FGGGRSGGSS NNRSSGFGDF GSDRSSQSGG
601: RSSFGGFGSN DGKRSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)