AT4G21430.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
B160; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G11950.1); Has 965 Blast hits to 873 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 302; Fungi - 24; Plants - 623; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11407835..11412159 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 105148.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.49 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||||||||||
| Length | 927 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSENEIVPDE FRCNRSDGKQ WRCKRRALEG KKMCESHHSQ QSLKRSKQKV AESSKLVRSR RGGGDEVASS EIEPNESRIR SKRLGKSKRK RVMGEAEAMD 101: EAVKKMKLKR GDLQLDLIRM VLKREVEKRK RLPNSNNKKK SNGGFSEFVG EELTRVLPNG IMAISPPSPT TSNVSSPCDV KVGEEPISMI KRRFRSKNIE 201: PLPIGKMQVV PFKGDLVNGR KEKKMRCHWC GTRGFGDLIS CLSCEREFFC IDCIEKRNKG SKEEVEKKCP VCRGSCRCKV CSVTNSGVTE CKDSQSVRSD 301: IDRVLHLHYA VCMLLPVLKE INAEHKVEVE NDAEKKEGNP AEPQIHSSEL TSDDRQPCSN GRDFAVVDLQ RMCTRSSSVL RLNSDQDQSQ ESLSRKVGSV 401: KCSNGIKSPK VCKRKEVKGC SNNLFLSLFP LELTSKLEIS AEEVVSCYEL PEILDKYSGC PFCIGMETQS SSSDSHLKEA SKTREDGTGN FLYYPTVLDF 501: HQNNLEHFQT HWSKGHPVIV RSVIKSGSSL NWDPVALFCH YLMNRNNKTG NTTDCMDWFE VEIGVKQFFL GSLRGKAETN TCQERLKLEG WLSSSLFKEQ 601: FPNHYAEILN ILPISHYMDP KRGLLNIAAN LPDTVQPPDF GPCLNISYRS GEEYAQPDSV KKLGFETCDM VDILLYVTET PVSTNQICRI RKLMKNIGRV 701: RSKNPAKGRE SRFDKGKKRD RLDDYSSSDS ESSQHCLGAK CRGSEFEGEE RESCNYSCEE ESLSNTYGAQ WDVFQKQDVS KLLEYIKNHS LELESMDSSK 801: KKVSHPLLEQ SYYLDEYHKA RLKEEFDVEP WSFDQCVGEA VILPAGCPYQ IRKNKSCVNA VLKFLSPEHV SESIKRVKEL NQLPQSVKSK ANKIEVKKMA 901: IHKISEAVKE IRELTSSDST GALRLYN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)