AT5G49945.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1682) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1682); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1682 (InterPro:IPR012879); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1682) (TAIR:AT4G24330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20317418..20319432 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54595.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.42 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||
| Length | 480 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRYFSFFFL ALFLHYRIIV ASPFEGFDAE EDDVTDDSSH LLHHSLPPPL LTQSHSSLSD PDPEPEPSSA ECKSDLITES DLEHQSDSKT PSSTPFEYWD 101: EDEFEGLPVE IETLESPLIT ENGTHADPKT PDLKTSSEAQ GDTNDQTKKK KSYAVEIACV CFLIALAINY FVGKRENESL ALAWAAKFAS KDTIFQKNFS 201: MLGVSELEDS PLLLKEALNV FKFYASGRRY CHGLLATMEL KSRHDLISRV FNLVVPCKDE ITFEVYMNEE TMDHVVFAMT KKKAAKTMQK EMRDLQRFAG 301: IVSPPAGRKW VSEEFALISE SKEVAADLIT DTVLDQVFGD KAVDKYGKNF MSMHISDQHP GKHKKMMLFK FSLPDAKHMD DIVRLVALIP YYIDLVGRYR 401: LSSQARNKTE SGRQKAAEEA YKELHNARQE ALQKKKAEKK KMMEEAEAKM SAEVIRKKEA KERARQVKKA VPKMKMSRSH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)