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AT4G25870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G57270.3); Has 586 Blast hits to 584 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 555; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
DNASU:828693eggNOG:ENOG410IJDDeggNOG:ENOG410YDP6EMBL:AL049480
EMBL:AL161564EMBL:BT015319EMBL:BT020605EMBL:CP002687
EMBL:KJ138737EnsemblPlants:AT4G25870EnsemblPlants:AT4G25870.1entrez:828693
GeneID:828693GO:GO:0008375GO:GO:0016021GO:GO:0016757
Gramene:AT4G25870.1hmmpanther:PTHR31042hmmpanther:PTHR31042:SF22HOGENOM:HOG000237469
InterPro:IPR003406KEGG:ath:AT4G25870OMA:REYCGPGPfam:PF02485
PhylomeDB:Q9SVZ8PIR:T04241Proteomes:UP000006548RefSeq:NP_194317.1
TAIR:AT4G25870TMHMM:TMhelixUniGene:At.32224UniProt:Q9SVZ8
Coordinates (TAIR10) chr4:-:13149831..13151737
Molecular Weight (calculated) 45017.80 Da
IEP (calculated) 7.25
GRAVY (calculated) -0.36
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MGETQKILQG PRHHTSLKKP LWVVLTVSVT SMLLICTHMY PKHGKSSSCH GLYSTRGCED ALSKWLPVHV RKFTDEEIAA RAVVRDILRT PPFITNNSKI
101: AFLFLTPGTL PFEKLWDEFF KGHEGKFSIY IHPSKERPVH ISRHFSDREI HSDEVTWGRI SMVDAEKRLL VSALEDPDNQ HFVLVSESCI PLHTFDYTYR
201: YLLYSNVSFI ESFVDPGPHG TGRHMEHMLP EIAKEDFRKG AQWFTMKRQH AIIVMADGLY YSKFREYCGP GIEADKNCIA DEHYLPTFFN MIDPMGISNW
301: SVTFVDWSER RWHPKTYGGN EISLEFMKNV TSEDMSVHVT SVGKHGDELH WPCTWNGIKR PCYLFARKFH PDTLDTLVNL FPNYTNTAV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)