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AT1G53040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.521
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF616)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G28240.1); Has 330 Blast hits to 330 proteins in 44 species: Archae - 14; Bacteria - 43; Metazoa - 2; Fungi - 2; Plants - 220; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGX4eggNOG:ENOG4111C5PEMBL:AK229324EMBL:CP002684
EnsemblPlants:AT1G53040EnsemblPlants:AT1G53040.1EnsemblPlants:AT1G53040.2entrez:841738
GeneID:841738GO:GO:0016021GO:GO:0016757Gramene:AT1G53040.1
Gramene:AT1G53040.2hmmpanther:PTHR12956hmmpanther:PTHR12956:SF30HOGENOM:HOG000239482
InterPro:IPR006852KEGG:ath:AT1G53040OMA:FVDEETHPfam:PF04765
PhylomeDB:Q0WNW2Proteomes:UP000006548RefSeq:NP_175712.2RefSeq:NP_974013.1
TAIR:AT1G53040TMHMM:TMhelixUniGene:At.16237UniProt:Q0WNW2
Coordinates (TAIR10) chr1:-:19764567..19766870
Molecular Weight (calculated) 62178.30 Da
IEP (calculated) 8.70
GRAVY (calculated) -0.51
Length 540 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTSNSKEKE RSLSFLCCWY LGRRRVAMLL LLSLAFVVFV LGSYTINKES NSPNIHQSIE TMDFGSNQTP ISRELTSFYT KESDNDHVRD PFLWNGIGGS
101: DVDVNHPPPF LPSWHHHPCD SFSFPPPPPP GMRRPGPRPC PVCYLPPEEA LAHMPKYPFE SPLLKNLTYI REESPVKPEE SEGGSEFGGY PSLEHRTNSF
201: DIKESMTVHC GFIKGTKPGH QTGFDIDEDI LHELDQSHDV IVASAIFGKY DIIQEPVNIS EMARKNIPFY MFVDEETHLY LKNTSSYTDD NKRVGLWRII
301: VVHNVPYTDA RRNGKVPKLL LHRLFPNVRY SIWVDAKLQL VVDPYQILER FLWRTNSSFA ISRHYRRFDV FVEAEANKAA RKYDNASIDY QVEFYKKEGL
401: TPYTEAKLPI TSDVPEGCTI IREHIPITNL FTCVWFNEVD RFTSRDQLSF AIARDKIREK VDWSINMFLD CERRNFVKQV YHRDVLLTMK PPRASSRVLP
501: EPLVLPRGRL AGGRATPGKK TPGQRGKRRH RKVSAGGRNM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)