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AT4G27270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Quinone reductase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Quinone reductase family protein; FUNCTIONS IN: oxidoreductase activity, FMN binding; INVOLVED IN: negative regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavoprotein WrbA (InterPro:IPR010089), NADPH-dependent FMN reductase (InterPro:IPR005025), Flavodoxin/nitric oxide synthase (InterPro:IPR008254); BEST Arabidopsis thaliana protein match is: flavodoxin-like quinone reductase 1 (TAIR:AT5G54500.1); Has 3487 Blast hits to 3484 proteins in 1099 species: Archae - 83; Bacteria - 2629; Metazoa - 2; Fungi - 274; Plants - 205; Viruses - 1; Other Eukaryotes - 293 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G27270-MONOMERBioGrid:14122DNASU:828835EC:1.6.5.2
eggNOG:COG0655eggNOG:KOG3135EMBL:AK221196EMBL:AL030978
EMBL:AL161566EMBL:BT010514EMBL:CP002687EnsemblPlants:AT4G27270
EnsemblPlants:AT4G27270.1entrez:828835Gene3D:3.40.50.360GeneID:828835
Genevisible:Q6NQE2GO:GO:0003955GO:GO:0005886GO:GO:0009506
GO:GO:0010181GO:GO:0045892Gramene:AT4G27270.1HAMAP:MF_01017
hmmpanther:PTHR30546HOGENOM:HOG000030539InParanoid:Q6NQE2IntAct:Q6NQE2
InterPro:IPR005025InterPro:IPR008254InterPro:IPR010089InterPro:IPR029039
KEGG:00130+1.6.5.2KEGG:ath:AT4G27270KO:K03809OMA:TYGHISA
PaxDb:Q6NQE2Pfam:PF03358Pfam:Q6NQE2Pfscan:PS50902
PhylomeDB:Q6NQE2PIR:T05751PRIDE:Q6NQE2PRO:PR:Q6NQE2
PROSITE:PS50902ProteinModelPortal:Q6NQE2Proteomes:UP000006548RefSeq:NP_194457.2
SMR:Q6NQE2STRING:3702.AT4G27270.1SUPFAM:SSF52218TAIR:AT4G27270
TIGRfam:TIGR01755TIGRFAMs:TIGR01755UniGene:At.32111UniGene:At.45
UniProt:Q6NQE2
Coordinates (TAIR10) chr4:-:13661458..13663243
Molecular Weight (calculated) 21793.20 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.03
Length 205 amino acids
Sequence (TAIR10)
(BLAST)
001: MATKVYIVYY SMYGHVEKLA QEIRKGAASV DGVEAILWQV PETLQEDVLS KMSAPPKSDA PIITPNELAE ADGFIFGFPT RFGMMAAQFK AFLDATGGLW
101: RTQQLAGKPA GIFYSTGSQG GGQETTALTA ITQLVHHGMI FVPIGYTFGA GMFEMENVKG GSPYGAGTFA GDGSRQPTEL ELGQAFHQGK YIAAISKKLK
201: GPAAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)