AT3G29760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.972 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G26190.1); Has 1237 Blast hits to 872 proteins in 256 species: Archae - 8; Bacteria - 257; Metazoa - 241; Fungi - 123; Plants - 151; Viruses - 82; Other Eukaryotes - 375 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:11590064..11591833 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51392.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.34 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||
| Length | 465 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRAIEHSVEE EPLIKKAKLI DKVENCHEVS MLPLNETVVK GNEEVCLLDM EDKKETCVDV ESNERKKEEV SVSSLVDRKH VVSGDENVEK KEEGSVISAV 101: TSSDEVPVVK NNDSCVVSGD ETVEKNEEGC VILAVTSSDE VPVVKNNDSC VVSGEETIEK NKEGSVISAV TSNDEVPVVK NNDSCVVSGD ETVEKNEEGC 201: VILAVTSSDE VPVVKNNDSC VVSGEETIEK NKEGSVISAV TSNDEVPVVK NNDSCVVSGD ETIEKNEEGS VISAVMSSDE VSVVENNDSC VVFGGISGVN 301: SLVLRKKLLV LDLNGLLADI VTPLKDVPAD INIGRRAIFK RPFCDEFLRF CFDKFEVGIW SSRKQNNVVR ITEFLLGDLK SKLLFCWDMS YCATTSVGSL 401: ENRYKYVVFK DLNRLWEKHD PRLPWKMGDY NETNTVLLDD SPYKALLNPQ YSLIHTIIRT RQIHL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)