suba logo
AT5G08030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLC-like phosphodiesterases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLC-like phosphodiesterases superfamily protein; FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT1G74210.1); Has 6803 Blast hits to 6670 proteins in 1728 species: Archae - 62; Bacteria - 5228; Metazoa - 196; Fungi - 127; Plants - 339; Viruses - 7; Other Eukaryotes - 844 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G08030-MONOMEREC:3.1.4.46eggNOG:COG0584eggNOG:KOG2258
EMBL:AL133421EMBL:BT023450EMBL:CP002688EnsemblPlants:AT5G08030
EnsemblPlants:AT5G08030.1entrez:830697Gene3D:3.20.20.190GeneID:830697
Genevisible:Q9SD81GO:GO:0006071GO:GO:0006629GO:GO:0008889
Gramene:AT5G08030.1hmmpanther:PTHR23344hmmpanther:PTHR23344:SF19HOGENOM:HOG000004694
InParanoid:Q9SD81InterPro:IPR004129InterPro:IPR017946InterPro:IPR030395
KEGG:ath:AT5G08030KO:K01126OMA:TFRPENYPANTHER:PTHR23344
PaxDb:Q9SD81Pfam:PF03009Pfam:Q9SD81Pfscan:PS51704
PhylomeDB:Q9SD81PIR:T45628PRIDE:Q9SD81PRO:PR:Q9SD81
PROSITE:PS51704ProteinModelPortal:Q9SD81Proteomes:UP000006548RefSeq:NP_196420.1
SMR:Q9SD81STRING:3702.AT5G08030.1SUPFAM:SSF51695TAIR:AT5G08030
UniGene:At.636UniProt:Q9SD81
Coordinates (TAIR10) chr5:-:2575152..2576770
Molecular Weight (calculated) 42883.90 Da
IEP (calculated) 5.64
GRAVY (calculated) -0.43
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFKYLLPLL LLSLLVANCA SRPLYRLPSE AKHATKKPLQ TSRPYNLAHR GSNGELPEET APAYMRAIEE GADFIETDIL SSKDGVLICH HDVNLDDTTD
101: VADHKEFADR KRTYEVQGMN MTGFFTVDFT LKELKTLGAK QRYPFRDQQY NGKFPIITFD EYISIALDAP RVVGIYPEIK NPVFMNQQVK WADGKKFEDK
201: FVETLKKYGY KGSYLSEDWL KQPIFIQSFA ATSLVYISNM TDSPKLFLID DVTILTEDTN KTYAEITSDA YLDYIKPYVI GIGPWKDTIV PVNNNRLMTP
301: TDLVARAHSR NLQVHPYTYR NENQFLHLEF NQDPYLEYDY WLNKIGVDGL FTDFTGSLHN YQELKSPLPQ QQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)