AT2G30790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : photosystem II subunit P-2 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
photosystem II subunit P-2 (PSBP-2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: photosystem II subunit P-1 (TAIR:AT1G06680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:13119047..13119596 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 13443.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.88 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 125 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MITPTDKKSI TDYGSPEQFL SQVNYLLGKQ AYVGETASEG GFDANAVATA NILETSTQEI GGKEYYYLSV LTRTADGDEG GKHQLITATV NGGKLYICKA 101: QAGDKRWFKG ARKFVENAAT SFSVA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)