AT1G13650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: 18S pre-ribosomal assembly protein gar2-related (TAIR:AT2G03810.4); Has 3688 Blast hits to 1629 proteins in 255 species: Archae - 22; Bacteria - 222; Metazoa - 684; Fungi - 292; Plants - 62; Viruses - 14; Other Eukaryotes - 2392 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:4680571..4681903 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 32624.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.39 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.95 | ||||||||||||||||||||||||
| Length | 286 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPAYISEEKL FFNKKPFGSK ISDNNEIEEL DQENLVVTRQ EVNDDSKVAP RDVVATSTSV SKKALTLGDI LSLEDSQSPP NKNNTNGPEE NMVHHNPHLE 101: ITEESEADNS CDDNNLLKRN LPNGFGEISF CEAKSSLDYI TYCGPLSGSE NLSIRSDGTS ASSFALPILQ SEWNSSPVRM GKAEETQLRM VIAEERKVRK 201: DKAEKTQLRK EKAEESQLRE VKAEETQLRM VKAEETQLRK EKAEETQLRM VIAEERQLRK EKDEKRQLRK GKKGWRHYSS LLCCRF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)