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AT2G47750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.946
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : putative indole-3-acetic acid-amido synthetase GH3.9
Curator
Summary (TAIR10)
Encodes GH3.9, a member of the GH3 family auxin-responsive genes. gh3.9-1 mutants had greater primary root length, increased sensitivity to indole-3-acetic acid (IAA)-mediated root growth inhibition, but no obvious effects on apical dominance or leaf morphology.
Computational
Description (TAIR10)
putative indole-3-acetic acid-amido synthetase GH3.9 (GH3.9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: chloroplast envelope; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G28130.1); Has 1429 Blast hits to 1301 proteins in 228 species: Archae - 0; Bacteria - 485; Metazoa - 53; Fungi - 2; Plants - 681; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2014-MONOMERBioGrid:4722EC:6.3.2.-eggNOG:ENOG410IVM1
eggNOG:ENOG410YD5GEMBL:AC005309EMBL:AY054288EMBL:BT000629
EMBL:CP002685EnsemblPlants:AT2G47750EnsemblPlants:AT2G47750.1entrez:819387
GeneID:819387Genevisible:O82243GO:GO:0009941GO:GO:0016874
Gramene:AT2G47750.1hmmpanther:PTHR31901hmmpanther:PTHR31901:SF18HOGENOM:HOG000238302
InParanoid:O82243IntAct:O82243InterPro:IPR004993KEGG:00220+6.3.2.-
KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT2G47750KO:K14487
ncoils:CoilOMA:QPYIARIPANTHER:PTHR31901PaxDb:O82243
Pfam:O82243Pfam:PF03321PhylomeDB:O82243PIR:A84919
PRIDE:O82243PRO:PR:O82243ProteinModelPortal:O82243Proteomes:UP000006548
RefSeq:NP_182296.1SMR:O82243STRING:3702.AT2G47750.1TAIR:AT2G47750
tair10-symbols:GH3.9UniGene:At.21351UniProt:O82243
Coordinates (TAIR10) chr2:-:19560307..19562974
Molecular Weight (calculated) 66162.10 Da
IEP (calculated) 6.42
GRAVY (calculated) -0.11
Length 585 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVMKLDHDS VLKELERITS KAAEVQDNIL RGILERNKDT EYLSKYMNGS KDVLEFKRAV PIIIYKDIYP YIQRIANGED SSLITGHSIT EILCSSGTSA
101: GEPKLMPTIP EDLDRRTFLY NLIIPIVNKY ITGLDKGKAM YLNFVKAETS TPCGLPIRAV LTSYYKSKHF QCRPYDPFND LTSPIQTILC EDSNQSMYCQ
201: LLAGLIHRHK VMRLGAVFAS AFLRAISYLE KKWSQLCEDI RTGSLNPMIT DPGCQMAMSC LLMSPNPELA SEIEEICGRS SWKGILCQLW PKAKFIEAVV
301: TGSMAQYIPA LEFFSQGKIP LVCPMYASSE TYFGVNVEPL SKPSDVVFTL LPNMCYFEFI PLGKNGTLSF DLDDDEQVPC DKVVDLVNVK LGRYYELVVT
401: TFAGLYRYRI GDVLQVAGFY NGAPQFRFIC RRNVVLSIDL DKTNEEDLHR SITLAKKKLG SNAFLAEYTS YADTSSVPGH YVLFWEIQGH LEPKLMEECC
501: VAVEEELDYI YRQCRTKERS IGALEIRVVK PGTFEKLMDL IISQGGSFNQ YKTPRCVKSN SATFKLLNGH VMASFFSPRD PTWVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)