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AT1G11070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1); Has 579 Blast hits to 567 proteins in 152 species: Archae - 0; Bacteria - 68; Metazoa - 159; Fungi - 113; Plants - 172; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVMGeggNOG:ENOG41105SJEMBL:CP002684EnsemblPlants:AT1G11070
EnsemblPlants:AT1G11070.1entrez:837648GeneID:837648Gramene:AT1G11070.1
hmmpanther:PTHR31342hmmpanther:PTHR31342:SF16InParanoid:F4I7C8KEGG:ath:AT1G11070
ncoils:CoilOMA:ISSGCMEPaxDb:F4I7C8PRIDE:F4I7C8
ProteinModelPortal:F4I7C8Proteomes:UP000006548RefSeq:NP_172574.5TAIR:AT1G11070
UniGene:At.16753UniGene:At.42153UniProt:F4I7C8
Coordinates (TAIR10) chr1:-:3690406..3693648
Molecular Weight (calculated) 84815.50 Da
IEP (calculated) 10.23
GRAVY (calculated) -0.58
Length 763 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVKTCKVEP LKGQTPLRSS KTKQDAKPYS CSSPPSIKAY TSPFVSQKTS RRVALSAEDI KNAHREATKI SSSSCGSSKW TGNFILMVEL RRKIINFRTI
101: IDLPPLTYYL SISNMVMRTM KDLHKLCPEI IDSSQILEMR REEVDKLLDN FYNALKSIGD SWIDDHEWII KSKYRSSNIR KNLSDRLVEK VLAALDGLIK
201: GMNERLNTTE NGNVEMKKKV SPRSTKTSND RSESLAKQPI RPKTVLSPPS KVHGDFSISV SNLPRNVRMQ ALVKLSPIDV KRLAIQNFSQ KEALSNNGDG
301: DDESLKVKKS ETEEKAKEAI LEKQDSVKSQ IDDKDCSKVS VKSEMVSKSF APPPPPPPGN AAIPVEPPLT MSAEKESYAP LPPPPGRAAL PPPPPLPMAV
401: RKGVAAPPLP PPGTAALPPP PPLPMAAGKG VAAPPPPPPG ARGGLGAKKV TSKLKRSTHL GALFRFLKGK LEGKNPEVRS RGAGGGSKGA TGSAPASGKQ
501: GMADALAEIT KKSPYFQKIE EDVRMYMTSI NELKTDITKF KNKDITELQK FHHRIESVLE KLEDETQVLA RCEGFPHKKL EAIRMAAALY SKLEGMIKEL
601: KNWKIESPAN QLYDKTERYF AKASHRNTDF RLFLRLSFFL IRKEIETLDQ IKAEEEKKFK SNNIHFDFNI LVQIKELMVD ISSGCMELAL KEKREAKIAS
701: QTTAESLEAK PSTKNKTPGW AKTLWRAFHF AYRVYTFAGG HDDRADKLTR ELAEEIEQIL GNQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)