AT2G32550.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.885 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Cell differentiation, Rcd1-like protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Cell differentiation, Rcd1-like protein; CONTAINS InterPro DOMAIN/s: Cell differentiation, Rcd1-like (InterPro:IPR007216); BEST Arabidopsis thaliana protein match is: Cell differentiation, Rcd1-like protein (TAIR:AT5G12980.1); Has 472 Blast hits to 471 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 133; Plants - 100; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:13819406..13822600 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36823.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.81 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||
| Length | 322 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSENMVNLPD SLYEDYSKLK LTSPSNASSS SSAPPPRLSV VAHPTVEMII QWVCDIHKPK SYMSDFALHN LAYHRNDFEF LPSLLWESKN TVYIMLQEVF 101: EAYRHLAGHI SLRLFPHPLN PLRVYNVFLL FQSMACHPDT SRQFLRAKMP NYFYPLMDTG LIDKSDECMR LAALGVIAHM LKASEDGAVN RYLMESGVVG 201: FCVKPIEFGS TETKKVALYI LDKIMSTDQG LYYCCVLADR FYVIDELLKK VLFYLSNMVR PPSSLFSLVT GCYVKLSQNS RARNGIRRYT PFLLFDGTFS 301: RLYAEDPVAA NNRIQLLQNL DN |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)