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AT4G25050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : acyl carrier protein 4
Curator
Summary (TAIR10)
encodes an acyl carrier protein predominantly expressed in leaves. Gene expression is upregulated by light.
Computational
Description (TAIR10)
acyl carrier protein 4 (ACP4); FUNCTIONS IN: acyl carrier activity; INVOLVED IN: response to light stimulus, fatty acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phosphopantetheine-binding (InterPro:IPR006163), Acyl carrier protein (ACP) (InterPro:IPR003231), Acyl carrier protein-like (InterPro:IPR009081), Phosphopantetheine attachment site (InterPro:IPR006162); BEST Arabidopsis thaliana protein match is: acyl carrier protein 1 (TAIR:AT3G05020.1); Has 6964 Blast hits to 6964 proteins in 2327 species: Archae - 0; Bacteria - 4641; Metazoa - 140; Fungi - 123; Plants - 344; Viruses - 2; Other Eukaryotes - 1714 (source: NCBI BLink).
Protein Annotations
EMBL:AL035523EMBL:AL161562EMBL:AY039527EMBL:AY050471
EMBL:AY084704EMBL:CP002687EnsemblPlants:AT4G25050EnsemblPlants:AT4G25050.1
entrez:828608ExpressionAtlas:Q9SW21Gene3D:1.10.1200.10GeneID:828608
Genevisible:Q9SW21GO:GO:0006633GO:GO:0009507GO:GO:0009627
GO:GO:0042335HAMAP:MF_01217hmmpanther:PTHR20863hmmpanther:PTHR20863:SF28
HOGENOM:HOG000178184InParanoid:Q9SW21IntAct:Q9SW21InterPro:IPR003231
InterPro:IPR006162InterPro:IPR009081Pfam:PF00550Pfam:Q9SW21
Pfscan:PS50075PhylomeDB:Q9SW21PIR:T05526PRIDE:Q9SW21
PRO:PR:Q9SW21ProDom:PD000887ProMEX:Q9SW21PROSITE:PS00012
PROSITE:PS50075ProteinModelPortal:Q9SW21Proteomes:UP000006548RefSeq:NP_194235.1
scanprosite:PS00012SMR:Q9SW21SUPFAM:SSF47336TAIR:AT4G25050
tair10-symbols:ACP4TIGRfam:TIGR00517TIGRFAMs:TIGR00517UniGene:At.23757
UniProt:Q9SW21
Coordinates (TAIR10) chr4:+:12870178..12871024
Molecular Weight (calculated) 14545.20 Da
IEP (calculated) 4.46
GRAVY (calculated) -0.01
Length 137 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLSTTSLS FKAPSTTISQ VLRKASSSQS VTFGRFTSST KSLRLQISCA AKAETVQKVS DIVKEQLALA ADVPLTAESK FSALGADSLD TVEIVMALEE
101: KFNISVEESD AQNITTIQEA ADLIEDLVQK KPAAETS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)