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AT1G71890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.
Computational
Description (TAIR10)
SUC5; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: seed development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 1 (TAIR:AT1G71880.1); Has 2157 Blast hits to 2049 proteins in 534 species: Archae - 36; Bacteria - 796; Metazoa - 398; Fungi - 190; Plants - 419; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPTReggNOG:KOG0637EMBL:AC021665EMBL:AJ252133
EMBL:CP002684EnsemblPlants:AT1G71890EnsemblPlants:AT1G71890.1entrez:843520
GeneID:843520Genevisible:Q9C8X2GO:GO:0005886GO:GO:0005887
GO:GO:0005985GO:GO:0008515GO:GO:0009506GO:GO:0015225
GO:GO:0015293GO:GO:0015878GO:GO:0048316Gramene:AT1G71890.1
hmmpanther:PTHR19432hmmpanther:PTHR19432:SF38HOGENOM:HOG000239187InParanoid:Q9C8X2
InterPro:IPR005989InterPro:IPR020846iPTMnet:Q9C8X2KEGG:ath:AT1G71890
KO:K15378OMA:TIDIMILPaxDb:Q9C8X2Pfam:PF13347
Pfam:Q9C8X2PhylomeDB:Q9C8X2PIR:F96741PRIDE:Q9C8X2
PRO:PR:Q9C8X2ProteinModelPortal:Q9C8X2Proteomes:UP000006548RefSeq:NP_177334.1
STRING:3702.AT1G71890.1SUPFAM:SSF103473TAIR:AT1G71890tair10-symbols:ATSUC5
tair10-symbols:SUC5TCDB:2.A.2.4.12TIGRfam:TIGR01301TIGRFAMs:TIGR01301
TMHMM:TMhelixUniGene:At.23136UniPathway:UPA00238UniProt:Q9C8X2
Coordinates (TAIR10) chr1:+:27058492..27060573
Molecular Weight (calculated) 54837.20 Da
IEP (calculated) 8.76
GRAVY (calculated) 0.45
Length 512 amino acids
Sequence (TAIR10)
(BLAST)
001: MGALEAERAA NNATALETQS SPEDLGQPSP LRKIISVASI AAGVQFGWAL QLSLLTPYIQ LLGIPHKWSS YMWLCGPISG MIVQPIVGYH SDRCESRFGR
101: RRPFIAAGVA LVAVSVFLIG FAADMGHSFG DKLENKVRTR AIIIFLTGFW FLDVANNTLQ GPCRAFLADL AAGDAKKTRV ANACFSFFMA VGNVLGYAAG
201: SYTNLHKMFP FTMTKACDIY CANLKTCFFL SITLLLIVTF SSLWYVKDKQ WSPPQGDKEE KTSSLFFFGE IFGAVRHMKR PMVMLLIVTV INWIAWFPFI
301: LYDTDWMGRE VYGGNSDGDE RSKKLYDQGV QAGALGLMFN SILLGFVSLG VESIGRKMGG AKRLWGCVNF ILAIGLAMTV LVTKSAEHHR EIAGPLAGPS
401: SGIKAGVFSL FTVLGIPLAI TYSIPFALAS IFSTNSGAGQ GLSLGVLNIA ICIPQMIVSF SSGPLDAQFG GGNLPSFVVG AIAAAVSGVL ALTVLPSPPP
501: DAPAMSGAMG FH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)