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AT4G21180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 1.000
ASURE: endoplasmic reticulum
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DnaJ / Sec63 Brl domains-containing protein
Curator
Summary (TAIR10)
J domain protein localized in ER membrane.
Computational
Description (TAIR10)
ATERDJ2B; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: integral to endoplasmic reticulum membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DnaJ / Sec63 Brl domains-containing protein (TAIR:AT1G79940.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5407eggNOG:KOG0721eggNOG:KOG0951EMBL:AL021960
EMBL:AL161554EMBL:AY050792EMBL:CP002687EnsemblPlants:AT4G21180
EnsemblPlants:AT4G21180.1entrez:827866Gene3D:1.10.287.110Gene3D:2.60.40.150
GeneID:827866Genevisible:F4JIN3GO:GO:0005783GO:GO:0005886
GO:GO:0015031GO:GO:0030176Gramene:AT4G21180.1HOGENOM:HOG000240711
InParanoid:F4JIN3InterPro:IPR000008InterPro:IPR001623InterPro:IPR004179
InterPro:IPR014756iPTMnet:F4JIN3KEGG:ath:AT4G21180KO:K09540
OMA:LWRSSKYPaxDb:F4JIN3Pfam:F4JIN3Pfam:PF00226
Pfam:PF02889Pfscan:PS50076PIR:T04949PRIDE:F4JIN3
PRINTS:PR00625PRO:PR:F4JIN3PROSITE:PS50076ProteinModelPortal:F4JIN3
Proteomes:UP000006548Reactome:R-ATH-381038RefSeq:NP_567621.1SMART:SM00271
SMART:SM00973SMR:F4JIN3STRING:3702.AT4G21180.1SUPFAM:SSF158702
SUPFAM:SSF46565SUPFAM:SSF81296TAIR:AT4G21180tair10-symbols:ATERDJ2B
TMHMM:TMhelixUniGene:At.23696UniGene:At.71130UniProt:F4JIN3
Coordinates (TAIR10) chr4:+:11289337..11292179
Molecular Weight (calculated) 74828.80 Da
IEP (calculated) 5.26
GRAVY (calculated) -0.33
Length 661 amino acids
Sequence (TAIR10)
(BLAST)
001: MAESEENSVL FPIFILTMMA IPLVPYTFVK LSRAFSKKQR SIHCQCLECD RSGKYKRSIS QSISSFTSCS NLTVVLLWIV MIFLIYHTKN MSRESQLFEP
101: FGILGLEPGA SDSEIKKAYR RLSIQYHPDK NPDPEANKYF VESIAKAYQA LTDPLSRENF EKYGHPDGRQ GYTMGIALPQ FILNMNGESG GILLLCTVGL
201: CILLPLVIAS IYLWRSSKYT GNHVKLQTRQ AYFELLQPSL TPSKVMDIFI RAAEYAEISV RKSDDESLQK LFMSVKSELN LDPKKLKQEE AKFWKKHPAT
301: IKTELLIQKQ LTRESSVLSP TLQRDFRHVL EFAPRLLEDL IKMAVIPRNE QGRGWLRPAL GVMELSQCIV QAVPLSARKS SSEDIAPFLQ LPHFNESIAK
401: SIALQVKSFQ KFQELSLAER SKLLREVVSL SETDVQDIEK VLEMIPSLKI NVTCKTEGEE GIQEGDIMTV QAWITLKRPN GLIGAIPHSP YFPFHKEENF
501: WVLLADSNHV WFFQKVKFMD EAGAIAAASN TITETMEPLG ASVKETNDAV KEAVEKVKSG SRLVMGRLLA PGEGTYNLTC FCLSDTWIGC DQKTSLKVEV
601: LKRTRDVEGE NAEEGLEEED DEIEEEDYES EYSEDEEDKK RGSKKKVNKE SSSEESGSDE E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)