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AT3G14930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uroporphyrinogen decarboxylase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HEME1; FUNCTIONS IN: uroporphyrinogen decarboxylase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uroporphyrinogen decarboxylase HemE (InterPro:IPR006361), Uroporphyrinogen decarboxylase (URO-D) (InterPro:IPR000257); BEST Arabidopsis thaliana protein match is: Uroporphyrinogen decarboxylase (TAIR:AT2G40490.1); Has 7323 Blast hits to 7320 proteins in 2007 species: Archae - 103; Bacteria - 3942; Metazoa - 236; Fungi - 136; Plants - 121; Viruses - 0; Other Eukaryotes - 2785 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G14930-MONOMERBioCyc:ARA:GQT-1467-MONOMERBioCyc:ARA:GQT-1468-MONOMERBioGrid:6056
EC:4.1.1.37eggNOG:COG0407eggNOG:KOG2872EMBL:AP000370
EMBL:AY057663EMBL:AY136476EMBL:BT008826EMBL:BX824686
EMBL:CP002686EnsemblPlants:AT3G14930EnsemblPlants:AT3G14930.1EnsemblPlants:AT3G14930.2
entrez:820722GeneID:820722Genevisible:Q93ZB6GO:GO:0004853
GO:GO:0006782GO:GO:0006783GO:GO:0009507GO:GO:0009570
GO:GO:0015995GO:GO:0046686gramene_pathway:4.1.1.37gramene_pathway:CHLOROPHYLL-SYN
gramene_pathway:HEME-BIOSYNTHESIS-IIHAMAP:MF_00218hmmpanther:PTHR21091hmmpanther:PTHR21091:SF105
HOGENOM:HOG000253896InParanoid:Q93ZB6InterPro:IPR000257InterPro:IPR006361
KEGG:00860+4.1.1.37KEGG:ath:AT3G14930KO:K01599OMA:QLPPHMW
PaxDb:Q93ZB6Pfam:PF01208Pfam:Q93ZB6PhylomeDB:Q93ZB6
PRIDE:Q93ZB6PRO:PR:Q93ZB6PROSITE:PS00906PROSITE:PS00907
ProteinModelPortal:Q93ZB6Proteomes:UP000006548Reactome:R-ATH-189451RefSeq:NP_566495.1
RefSeq:NP_850587.1RefSeq:NP_974316.1scanprosite:PS00906scanprosite:PS00907
SMR:Q93ZB6STRING:3702.AT3G14930.1SUPFAM:SSF51726TAIR:AT3G14930
tair10-symbols:HEME1TIGRfam:TIGR01464TIGRFAMs:TIGR01464UniGene:At.6655
UniPathway:UPA00251UniPathway:UPA00668UniProt:Q93ZB6
Coordinates (TAIR10) chr3:+:5020675..5022577
Molecular Weight (calculated) 46256.80 Da
IEP (calculated) 7.12
GRAVY (calculated) -0.08
Length 418 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLSSPTSAC SSSRCYSSGL SFPIGFGSNP INVGLVCYPK RYSIAARKFV VACSSSSSDP LLVKAAKGQA ISRPPAWMMR QAGRYMAVYQ KLAKKHPSFR
101: ERSENTDLIV EISLQPWQAF RPDGVIIFSD ILTPLPAFGV PFDIEEVKGP VIQSPIRTEE DMKRLHPIDF EKLQFVGDSL KILRREVGEH AAVLGFVGAP
201: WTIATYIVEG GTTRTYTVIK NMCHTAPDVL RALLSHLTKA ITEYVVYQVE HGAHCIQIFD SWGGQLTPEM WERWSKPYIE EIIHAVKKRC PDTPIVFYIN
301: GNGGLLERMK GTGADVIGLD WTVDMADGRR RLGSEVSVQG NVDPAYLFSP LPALTEEIER VVKCAGPKGH ILNLGHGVLV GTPEEAVAHF FETARNLDYQ
401: TLFQNHVPAE KAEPELVV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)