AT2G48000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G30780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:19639270..19640803 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55043.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.04 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 481 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKRMWRISL ISQISDLLCL SRGSSSTLKT LTPFCFTLSR SPFHQSGGDD DASGLKNQLL RFRNDSGKVA SVLERNKIQG AAFVELLRQL RPWPVLSQLV 101: FDWRRNKALC DGLPMTADEY AKGITISGRL KNVDLALSLF HESANKTTSV YNALMGAYLC NGLSHHCEQL FLDFNSQQDG PSSSTPSVST YNILISLYGR 201: LIMVERMESV FLQLQQLNIL PDSSTYNNLI AGYIYAWDWD KMEATFHSMK NGLVKPTLAT YLLMLRGYAN SGNLLRMEDM YQAVKRHVDR NEIKLIESMI 301: CAYYRSCHKD RIRKIKTLSK LIPKKSYKPW LYLLLMQVYA KDDNLHAMEN FIDQAITKGL QIETDGIMRS IVASYFRCNA VDKLAKFVQR ANSAGWKMSR 401: SMFHGLMIMY GSQKRFKEME NVLSEMESFK ISRSKKTLCI LLRVYAATHG QEHKVNQVAG MMLKHGHDFQ RPEASKRVMG K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)