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AT2G20725.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CAAX amino terminal protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CAAX amino terminal protease family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: CAAX amino terminal protease family protein (TAIR:AT1G14270.1); Has 2599 Blast hits to 2599 proteins in 824 species: Archae - 26; Bacteria - 2240; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1266eggNOG:ENOG410IE2ZEMBL:AC006234EMBL:AF370273
EMBL:AK117786EMBL:AY063007EMBL:CP002685EnsemblPlants:AT2G20725
EnsemblPlants:AT2G20725.1entrez:816602GeneID:816602GO:GO:0008233
GO:GO:0016021Gramene:AT2G20725.1hmmpanther:PTHR10794hmmpanther:PTHR10794:SF38
HOGENOM:HOG000151187InterPro:IPR003675KEGG:ath:AT2G20725MEROPS:M79.A03
OMA:DDIWRIYPfam:PF02517PhylomeDB:Q94K61Proteomes:UP000006548
RefSeq:NP_565483.1TAIR:AT2G20725TMHMM:TMhelixUniGene:At.21608
UniProt:Q94K61
Coordinates (TAIR10) chr2:-:8934113..8935426
Molecular Weight (calculated) 33020.10 Da
IEP (calculated) 7.34
GRAVY (calculated) 0.34
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MILGRWVSFS CGNTPVTNCS ERRRHTEFRR LSSASTCRPS LICSCLKSKS SQETTQIEQL GNGEGFSVLA SEIPWEDDNI WSTFALYMFS LHIPLSFGGL
101: SIVANILHRQ VLDPQTQVLS LVVLQMVELA GTVLLLRTTA KPQCKSINFL KGNNETREGR NWVVGSALGL GCLVGFIFVT SLVADQLFGP KAVHESELEK
201: IMVSGEVARS GCFALYCVVA PILEEIVYRR FLLTSLASRM EWWKALVISS GVFAAGHFSG EDFVQLFGIG CGLGLCYSWS GNLASSVLVH SLYNALTLLF
301: S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)