suba logo
AT3G04890.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30962257 (2019): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:20061580 (2010): plastid plastid envelope
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterized conserved protein (DUF2358)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterized conserved protein (DUF2358); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein (TAIR:AT2G46100.1); Has 198 Blast hits to 198 proteins in 56 species: Archae - 0; Bacteria - 82; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXIYeggNOG:ENOG4111RDUEMBL:AF370271EMBL:AY063034
EMBL:CP002686EnsemblPlants:AT3G04890EnsemblPlants:AT3G04890.1entrez:819649
ExpressionAtlas:Q94K63GeneID:819649Gramene:AT3G04890.1hmmpanther:PTHR34123
hmmpanther:PTHR34123:SF3InterPro:IPR018790InterPro:IPR032710Pfam:PF10184
PhylomeDB:Q94K63Proteomes:UP000006548RefSeq:NP_566242.1STRING:3702.AT3G04890.2
SUPFAM:SSF54427TAIR:AT3G04890UniGene:At.19068UniProt:Q94K63
Coordinates (TAIR10) chr3:+:1347708..1349066
Molecular Weight (calculated) 24433.00 Da
IEP (calculated) 7.19
GRAVY (calculated) -0.20
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGVACQISI SSSSTFRRVN QWPRCFSGSP EKKTPAVLKW AVSGVTEFLR LISGAPSSTS IATNKDRSKN EVTAGDVDDV MGILRSDYRN FYFVTGVLTS
101: AIYSDDCIFE DPTISFQGTE LYERNLKLLV PFLEDASIEL QNMEKSESSQ RNYILATWKL RTYLKLPWRP LISINGNTVY DLDKDFKIVR HVESWNVSAL
201: EAIGQIFTVK SFPFRD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)