suba logo
AT5G15440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.887
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EID1-like 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EID1-like 1 (EDL1); BEST Arabidopsis thaliana protein match is: EID1-like 2 (TAIR:AT5G39360.1); Has 152 Blast hits to 132 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJH9eggNOG:ENOG4111HQBEMBL:AK226950EMBL:AL391143
EMBL:BT014972EMBL:CP002688EnsemblPlants:AT5G15440EnsemblPlants:AT5G15440.1
entrez:831397GeneID:831397Genevisible:Q9LF38Gramene:AT5G15440.1
hmmpanther:PTHR31348hmmpanther:PTHR31348:SF2HOGENOM:HOG000238370InParanoid:Q9LF38
InterPro:IPR001810KEGG:ath:AT5G15440OMA:EDCIEYFPaxDb:Q9LF38
Pfam:Q9LF38PhylomeDB:Q9LF38PIR:T51522PRO:PR:Q9LF38
Proteomes:UP000006548RefSeq:NP_197048.1STRING:3702.AT5G15440.1SUPFAM:SSF81383
TAIR:AT5G15440tair10-symbols:EDL1UniGene:At.49023UniGene:At.66737
UniProt:Q9LF38
Coordinates (TAIR10) chr5:+:5013158..5014131
Molecular Weight (calculated) 33097.00 Da
IEP (calculated) 8.24
GRAVY (calculated) -0.30
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MILPKQYCCT HSPSCQCTKG HLNEDVLLLV FQHLNWNPKL VATLSCVCRW FDDFAKRVLW KEFCKTRAPK MMLDLQSSGS HCIDGNWRAL GKLLIYCSGC
101: TQGGLFNSSV QIPGHFVYRT RFSRTLGRSL LPPQCRTDVL YVCDPCEHLD QGEEGDVGLF RGIFKSFPTS KVRKVIINKA VPFHPSEVCP YCKAKLWSML
201: QAKIIPQSAC IRLEAYEDCI EYFVCLNGHL LGICTLAPLS DSEDAIPSED NNHTEKKQDN GFPRENVLKR RNSLLGGSEN GPPPQKRLTN PNQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)