AT5G16520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.954 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5394740..5397371 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 68316.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.12 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||
| Length | 608 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MACPRNSITY NATRCACGIG QLLNRSSGSC EIFGWPSTIS TDKDVNYSVI SFAETLFAFD RIRKFTQSQA IFLEATLVML LSWLVFCFFL RFTKLGDGRN 101: VWFNLRWWIT RLDVFFSTRH WLDDQQIVKK RKTELGGTFS VASWIVFIGL FAALLYQIIT KRTIEVHNVR ATGSPDLISF ENDLEFNITA VSDMSCSNLR 201: GIGNVVMGNP GFSEFKVAAL SSLGSYTCKN TTSGPTVNFK CTKCRLTNDY IYISWHFVDL PDSPAAAVGF QFNFTSKNGP NEKHMSFVSG TLRNGSILDE 301: SPVTFRGTEG NILKFNLFPR IYHHLHDLKL IQPLFHEFIP GSVYRDTTQL QASMGRSTDG ILNTTLFINY LSAYIVEIDH ENILGPVSFL ADLGGLYCIS 401: IGIFFYLLVQ CEYRIKKLRN EDTVFRKIRN RRKALDHWDK LRRYVAYTWD CSILVDDAIK TTKVSGMCGL TRPPTSSNSS EHGESIMANK KPNLGIEKNV 501: ISQPASLELS SFDSASSLAH GDNFSNKKSI THPISHSEDV SIPPPPPMEF IDGSSGSEVD AMDIKNKFQL LYDYNVLLRE KLLETQSLLN TLAPKPIASS 601: SSTVERSA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)