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AT3G57570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 48 Blast hits to 42 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIUAeggNOG:ENOG4111FEEEMBL:CP002686EnsemblPlants:AT3G57570
EnsemblPlants:AT3G57570.1entrez:824924ExpressionAtlas:F4J3F3Gene3D:1.25.10.10
GeneID:824924Gramene:AT3G57570.1hmmpanther:PTHR37743InterPro:IPR011989
InterPro:IPR016024PaxDb:F4J3F3PRIDE:F4J3F3ProteinModelPortal:F4J3F3
Proteomes:UP000006548RefSeq:NP_191316.5SUPFAM:SSF48371TAIR:AT3G57570
UniGene:At.28152UniProt:F4J3F3
Coordinates (TAIR10) chr3:+:21312598..21320105
Molecular Weight (calculated) 122042.00 Da
IEP (calculated) 6.45
GRAVY (calculated) -0.04
Length 1092 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEEELIRRSE PESLVSVTVA RFMSTLLSAR PKKLRESISR LTPDSQKGVS GSIDEALWFL EKCVIDAAER DEAMSEILVP IIEHTLRFKD SKHGNPAMIL
0101: LNWLFQDEVL FQAVSRNLSN IILRNEDRFL ALGWCLLIRR LVECEDTGDQ GFWHGIREKH SMFVEIVSSC VPHLLMIVRN GSILQDGYEV PSRLSLSAAD
0201: CLLSITGALA KRDNTLINRP KSPTITGSHQ PVALTPNISE KKKRPTSLPE DSNIETNCIL WNHMEDLTRL VQCLFAWNRK TRLLHAKGLS QVLKWLEELK
0301: EHHGGSQKEA GTEVSMGGAL LLSSCWKHYS VLLHMEDQKF SKISKELLEQ YLSGIKYYSE SYPQGCSDTK NGGIETQKFF LNCLCLLLGR FEGKKFESIL
0401: SEYGMKLVPI LLHQLRSNNE EISEGVVAIF KAVFFKLQSQ SGDSFSDTMC MDVVIPSLLH LLDERDGAAK AVSVLLADYC SKNAGNSCLS EILQRLASGT
0501: TVQRLNSLDV ISEVILMSKD SFPSHIPWKE IADCLLKCLD DEETCICKQT SELLKSIEPS FVLPNLVNLI YAPNGKVQSS ATETLLGVLK HHKEDFDVIC
0601: MLLTSLSNIQ ALDTAESNGH STEGLTFDSD RVLKLIPEWA RSVQNWNSLI GPLLDKMFLE PSNAIMVRFL SCISESLADT SDLVLPHVLS HMKKQNKVDA
0701: SFISRSDTKS SVDKTKSEKS LFDHLCPLLI LRLLPQRVFD DIDSSTIYGK FLSGDSVNDY QDIKFEDCQC IATFILERAF SKFEFEEVRK LSAELCGRLH
0801: PQVLFPTVLL QLEKATEIQD SLKIKACLFS ICTSLMVRGW ESLSHRVTPK IRKVLENILL WPSVEDEISK VQHGCIDCLA LMICAELQHL KSSKTSGGEK
0901: IRSTGKDTSG YSVLDYTIHC LIEDRSNCSS IPKLSTDILT CENPLPIPFR LCMANVIISA CQKNPESSKK TFARKALPPL IHSLKVISVP EVRAACIQVL
1001: FSATYHLKST LLPVSSDLLK LSLRFLEQGS EKEKLAGAKL MASLMASEDV ILENISEGLL EARSVLSKAS LSDPSRDVRE VCAKLLACIT PL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)