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AT1G79610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.810
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Na+/H+ antiporter 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Na+/H+ antiporter 6 (NHX6); FUNCTIONS IN: solute:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport, sodium ion transport, regulation of pH, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Na+/H+ exchanger, subfamily (InterPro:IPR004709), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Na+/H+ exchanger, isoform 5/6/8, conserved region (InterPro:IPR018409), Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: sodium hydrogen exchanger 5 (TAIR:AT1G54370.1); Has 6452 Blast hits to 6446 proteins in 1772 species: Archae - 105; Bacteria - 4409; Metazoa - 876; Fungi - 142; Plants - 423; Viruses - 0; Other Eukaryotes - 497 (source: NCBI BLink).
Protein Annotations
BioGrid:29518eggNOG:COG0025eggNOG:KOG1965EMBL:AC010793
EMBL:AF490590EMBL:AY091100EMBL:AY133748EMBL:CP002684
EnsemblPlants:AT1G79610EnsemblPlants:AT1G79610.1entrez:844299GeneID:844299
Genevisible:Q8RWU6GO:GO:0005768GO:GO:0006885GO:GO:0010008
GO:GO:0015385GO:GO:0016021GO:GO:0032580hmmpanther:PTHR10110
hmmpanther:PTHR10110:SF119HOGENOM:HOG000172307InParanoid:Q8RWU6IntAct:Q8RWU6
InterPro:IPR004709InterPro:IPR006153InterPro:IPR018422iPTMnet:Q8RWU6
KEGG:ath:AT1G79610KO:K14724OMA:AMEKHSWPANTHER:PTHR10110
PaxDb:Q8RWU6Pfam:PF00999Pfam:Q8RWU6PIR:D96827
PRIDE:Q8RWU6PRINTS:PR01084PRO:PR:Q8RWU6ProteinModelPortal:Q8RWU6
Proteomes:UP000006548Reactome:R-ATH-425986RefSeq:NP_178079.2SMR:Q8RWU6
STRING:3702.AT1G79610.1TAIR:AT1G79610tair10-symbols:ATNHX6tair10-symbols:NHX6
TIGRfam:TIGR00840TIGRFAMs:TIGR00840TMHMM:TMhelixUniGene:At.34083
UniProt:Q8RWU6
Coordinates (TAIR10) chr1:-:29953089..29957070
Molecular Weight (calculated) 59317.90 Da
IEP (calculated) 6.04
GRAVY (calculated) 0.38
Length 535 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSELQISPA IHDPQGQEKQ QQAAGVGILL QIMMLVLSFV LGHVLRRHKF YYLPEASASL LIGLIVGGLA NISNTETSIR TWFNFHDEFF FLFLLPPIIF
101: QSGFSLQPKP FFSNFGAIVT FSVLGTFVAS MVTGLLVYLG GVMFLMYRLP FVECLMFGSL ISATDPVTVL SIFQELGSDV NLYALVFGES VLNDAMAISL
201: YRTMSLVRSH SSGQNFFMVI VRFLETFVGS MSAGVGVGFT SALLFKYAGL DVDNLQNLEC CLFVLFPYFS YMLAEGLSLS GIVSILFTGI VMKHYTYSNL
301: SANSQRFVSA FFHLISSLAE TFVFIYMGFD IAMEKHSWSH LGFIFFSILF IVIARAANVF GCGYLVNLAR PAHRKIPMTH QKALWYSGLR GAMAFALALQ
401: SVHDLPEGHG QTIFTATTAI VVLTVLLIGG STGTMLEALE VVGDSHDTSL GDGFEVVNSR YMTSYDDEDT PPGSGFRTKL REFHKSAASF TELDRNYLTP
501: FFTSNNGDYD DEGNMEQHHE ERIPFTRRGN LNNRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)