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AT3G15180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), 26S proteasome non-ATPase regulatory subunit 5 (InterPro:IPR019538); Has 113 Blast hits to 113 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 62; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
EMBL:AK227431EMBL:BT006490EMBL:CP002686EnsemblPlants:AT3G15180
EnsemblPlants:AT3G15180.1entrez:820749ExpressionAtlas:Q84M90Gene3D:1.25.10.10
GeneID:820749GO:GO:0043248Gramene:AT3G15180.1hmmpanther:PTHR13554
HOGENOM:HOG000005767IntAct:Q84M90InterPro:IPR011989InterPro:IPR016024
InterPro:IPR019538Pfam:PF10508PhylomeDB:Q84M90Proteomes:UP000006548
RefSeq:NP_566503.1SMR:Q84M90SUPFAM:SSF48371TAIR:AT3G15180
UniGene:At.39093UniProt:Q84M90
Coordinates (TAIR10) chr3:+:5111952..5115803
Molecular Weight (calculated) 56695.30 Da
IEP (calculated) 5.01
GRAVY (calculated) 0.03
Length 519 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDVNQLFDA AFEFAHYPGA QNETSVKEFL DRFPLPVIFN ALQTDPDIPG FENTLVTCLE RLFKTKYGAS LIPQYMPVLQ VGLKADSAVV KSLACKTVLC
101: LLEDCDTNDV SSVQLVVNNG IYPLLLDYII NSDDEVANAA SETIKSLARF PDAMSVIFPS ETNDPTHLRN LAARCSSLAR VRVLSLIVKL FSISRLVASE
201: VKKSGLLDLL EAEMKGTKDT LVILNVLELY YELMEVEHSS EFVPQTSLIQ LLCSIISGTS TGPYEKLRAM MISGRLLSKE NIYKVVEEAS VKALISAIDG
301: SLESVEMNDT DAQEAAIDAL GQMGSTTKGA DLVLSTSPPA ARHVVASAFD RNAHGKQLAA LHALANIAGE TRPKSNRIVD GKAEESLRCL IYDAAAQSTK
401: LTPSGLFLSV LQQSSEIRLA GYRTLTALVA RPWCLVEILA KEEIINIVTD ATTETAKIAM EARYNCCKAI HEAFLCSNFV DDPRRLKTGD KLQEAVRSGP
501: YMSKKHRGAR PEVMTGEGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)