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AT4G19006.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
  • PMID:14623897 (2004): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Proteasome component (PCI) domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT5G45620.1); Has 1087 Blast hits to 1083 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 564; Fungi - 232; Plants - 168; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
Protein Annotations
BioGrid:12931eggNOG:ENOG410XPG9eggNOG:KOG2908EMBL:AK117761
EMBL:AL021711EMBL:AL161549EMBL:AY230842EMBL:CP002687
EnsemblPlants:AT4G19006EnsemblPlants:AT4G19006.1entrez:827638GeneID:827638
GO:GO:0000502GO:GO:0005634GO:GO:0005829GO:GO:0030163
Gramene:AT4G19006.1hmmpanther:PTHR10539HOGENOM:HOG000216633InParanoid:Q8GYA6
IntAct:Q8GYA6InterPro:IPR000717InterPro:IPR011991KEGG:ath:AT4G19006
KO:K03039OMA:WCGDVKNPaxDb:Q8GYA6Pfam:PF01399
Pfam:Q8GYA6PhylomeDB:Q8GYA6PRIDE:Q8GYA6PRO:PR:Q8GYA6
ProteinModelPortal:Q8GYA6Proteomes:UP000006548Reactome:R-ATH-1236978Reactome:R-ATH-174184
Reactome:R-ATH-349425Reactome:R-ATH-5632684Reactome:R-ATH-68949Reactome:R-ATH-69017
Reactome:R-ATH-983168RefSeq:NP_680721.2SMART:SM00088SMR:Q8GYA6
STRING:3702.AT4G19006.1SUPFAM:SSF46785TAIR:AT4G19006UniGene:At.21756
UniProt:Q8GYA6
Coordinates (TAIR10) chr4:-:10409349..10411347
Molecular Weight (calculated) 44022.90 Da
IEP (calculated) 4.90
GRAVY (calculated) -0.04
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALQYLESQ KNAHPELGEW YNSLADLYQK KLWHQLTLKL EQFIALSVFQ AGDALIQLYN NFITDFETRI NLLKLAHFAV VVSRQYPEKE AAVSYLEGVI
101: EKLKATKESR INEPISYIET QIALFKLEQG DQKECKKILD DGKSLLDSMT DIDPSVYANF FWVSSQYHKV RQEFSEFYKN ALLYLAYTSV DSLSESFKLD
201: LAFDLSLSAL LGENIYNFGE LLAHPILKSL LGTNVEWLYH ILQAFNHGDL VQYQELCRVH NASLSAQPAL VENEKKLLEK INILCLIEII FSRPAEDRTI
301: PLSVIAERTK LSIEDVEHLL MKSLSVHLIE GILDQVNGTV YVSWAQPRVL GIPQIKSLRD QLDSWVDKVH TTLLSVEAET PDLVAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)