AT5G05560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : E3 ubiquitin ligase, putative | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Arabidopsis thaliana E3 ubiquitin ligase | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 2771 (EMB2771); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1641452..1654685 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 186286.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.57 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1678 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPPGVRQLTV LGKFKPFGLI AEATDGKSPD DSYQYFLFDP ELTGERDDAD GNDANFSRQR EHELFIRDNC NVRKGYALVE ANFIGYWYNA CWSNLGRGTE 0101: AFLCVLQIAC LTIYNTSGEV VSVPLMRTVK SIWPLPCGLL LEQAGEVNPP SHVPFSPVSP ILGSREMLRQ RKEVGNSSPQ NFHSPVAHDL ISKRDMPCMS 0201: SHLILRDPLE EPGPTYVEER GKLTIMKDYD ERTIWTSDRL PLMTSYNKGK MQHSVWAAEF IESNLEASAS CSSGIVPDAV LSKRVSFRRI WQAKGAKKAA 0301: SKVFLATDNS VPVICFLILE QKKLLSVGLQ TVEINNEILF DVKPDISWSV SAIAAAPVVV TRSQVKIGLL PHLDIIVLSP ENDLFLYSGK QCLCRYVLPS 0401: WLGESIGSGD GESAKTDSGF RNLKITGLSD AVLGSINLSV NHSQIFRCAL TGKPSSSLAN DCIAAIAEGL RSDLYSLFLS LLWGDGHSDL QGSSIHFEWE 0501: ALCNIFLEIC QKPTVVHRKQ PKTASESSWE FLLISKFHKT YSRFHNGITS INRLDLEGIV PFDSKICSEE TLGSSCELMV QSLDCLHAVY ESLKMDNLRK 0601: QDLHHLAVLL CNIAKFLDEK CYLDYYIRDF PRLSTTIGAC TTLSSSRKPP NLFRWLENCL RRGCLSTNFD DLPDLIRRDG CSIVSWARKV VSFYSVLFGD 0701: KPEGRTLSSG VPCNIAPGSY SCNEELTILA MAGERFGLHQ LDLLPSGVSL PLRHALDSCR ESPPADWPAI AYVLLGREDM ALSVFRNFSS SKEFEMQSNT 0801: SLISMSIPYM LHLHPVIVPS SESIGLENTK IEDTNSVDGS VIDGMEHIFN SYTQLRYGRD LRLNEVRRLL CSARPVVVQT AANPTISDQE QQQAFTVPKL 0901: VLAGRLPSQQ NAIVNLDPNI RNIQELKTWP EFHNAVAAGL RLAPLQGKVS RTWIRYNKPG EPNAVHAGLL FGLGLQGYLH VLNLSDIYQY FTQDHESTTV 1001: GLMLGLAASY RGTMQPDIAK ALFFHVPARY QASYTEFEIP TLLQSAALVS VGMLFEGSAH QQTMQLLLGE IGRRSAGDNV LEREGYAVSA GFSLGLVALG 1101: RGGDALGSMD SLVNRLLLYL GAKEERSILV PSLEDHRSAA QITDGSTSNV DITAPGAIIA LTLMYLKTES EVIFSKLSIP QTHYDLECVR PDFIMLRVIA 1201: RNLIMWSRIC PTCDWIQSQV PEVVKNGISQ LRDDMDNMYE VDVEALVQAY VNIVAGACIS LGLRFAGTRD GNARDLLNSY ALYLLNEIKP LSATPGNAFP 1301: RGISKFVDRG TLEMCLYLII ISLSVVMAGS GDLQVFRLLR FLRSRNSADG HANYGTQMAV SLATGFLFLG GGMRTFSTNN GSLAMLLITL YPRLPSGPND 1401: NRCHLQAFRH LYVLATEARW LQTIDVDSGL PVYAPLEVTV KETKLYSETK FCEITPCILP ERAILKRICV CGPRYWPQQI ELVFGLRTLG ESNLIANSHR 1501: ELDSDSVDHL VSTFSSDPSL IAFAQLCCDK SWNNSFDFLI LDLILWSQVA LAYNEAVSTG RLASSGGFVQ SIFLASLRKR CEEVLNCSTE LKINLRNYLT 1601: SEAWPYDKNS KLQKDIIILS WYLKWFNVPS PSIIKAAVEK IKSKSKNSTS AIPLLRLLLP NTHISVIGEI DRVFFPSN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)