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AT5G01290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : mRNA capping enzyme family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
mRNA capping enzyme family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5'-phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, mRNA processing, mRNA capping, dephosphorylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), mRNA capping enzyme (InterPro:IPR001339), mRNA capping enzyme, bifunctional (InterPro:IPR017074), Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), mRNA capping enzyme, C-terminal (InterPro:IPR013846); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT3G09100.2); Has 888 Blast hits to 860 proteins in 246 species: Archae - 0; Bacteria - 2; Metazoa - 276; Fungi - 241; Plants - 79; Viruses - 71; Other Eukaryotes - 219 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G01290-MONOMEReggNOG:COG5226eggNOG:KOG2386EMBL:BT000440
EMBL:BT001162EMBL:CP002688EnsemblPlants:AT5G01290EnsemblPlants:AT5G01290.1
entrez:831240Gene3D:2.40.50.140Gene3D:3.90.190.10GeneID:831240
GO:GO:0004484GO:GO:0004651GO:GO:0004725GO:GO:0005634
GO:GO:0006370GO:GO:0008138Gramene:AT5G01290.1hmmpanther:PTHR10367
hmmpanther:PTHR10367:SF11HOGENOM:HOG000264524InterPro:IPR000340InterPro:IPR000387
InterPro:IPR001339InterPro:IPR012340InterPro:IPR013846InterPro:IPR016130
InterPro:IPR017074InterPro:IPR029021KEGG:ath:AT5G01290KO:K13917
ncoils:CoilOMA:ARVMKLTPfam:PF00782Pfam:PF01331
Pfam:PF03919Pfscan:PS50056PhylomeDB:Q8GSD7PIRSF:PIRSF036958
PROSITE:PS00383PROSITE:PS50056Proteomes:UP000006548Reactome:R-ATH-72086
Reactome:R-ATH-77075RefSeq:NP_195749.2scanprosite:PS00383SMR:Q8GSD7
STRING:3702.AT5G01290.1SUPFAM:SSF50249SUPFAM:SSF52799SUPFAM:SSF56091
TAIR:AT5G01290UniGene:At.33912UniGene:At.48967UniProt:Q8GSD7
Coordinates (TAIR10) chr5:+:117520..121392
Molecular Weight (calculated) 77073.00 Da
IEP (calculated) 7.91
GRAVY (calculated) -0.73
Length 657 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLNASPQPE EDDEPFKRRH EDRMESAVEI ARREREERKK RMRFDRPTRV SQPAFRDQYR DTRVYDQSKL PQGWLDCPGF GLEIGCIIPS KVPLSESYNE
101: HVPPGKRYSF KQVVRNQRIN GRKLGLVIDL TNTTRYYPTL DLKKDGIKHV KIACRGRDAV PDNVSVNTFV NEVLQFVLNQ KHAKKYVLVH CTHGHNRTGF
201: MIVHYLMRSM PTMNVTQALK LFSDARPPGI YKPDYIDALY TFYHEIKPES VTCPPTPEWK RSAELDLNGE AVQDDDDDDS PPDPVQEINQ ENVKMSNDDT
301: LGDEIPHYQE EAYRQFCYKM LMMNVGGRGF MQFPGSHPVS LDRESLQLLR QRYYYATWKA DGTRYMMLLT IDGCYLIDRS FKFRRVQMRF PCKHSREGIS
401: DKVHHYTLLD GEMVIDTPTG EQGEARRRYL VYDMVAINGE SVVERTFCER WNMFVREVIG PRAAEKLRSH CYRYDLEPFA VRMKGFWLLS TVEKLLKNTI
501: PSLSHEADGL IFQGWDDPYV PRTHKGLLKW KYAEMNSVDF LYEMGEEEGR GFLFLHERGK KKLMEGYSVE FRDDSDPSSY NGKIVECAWD KDKKVWFSMR
601: IRVDKTTPND INTARKVIKS INDNITEEVL LQEIREIIRL PMYADRIRND SQAARRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)